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@boecker-lab Chair of Bioinformatics Jena

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    14 repositories

    • 2-step

      Public
      Python
      •
      MIT License
      •0•5•0•0•Updated May 22, 2025May 22, 2025

    • cbc-java

      Public
      Java JNI library to call coin-or cbc solver from java. Packages platform dependent JNI libs as separate jars.
      Java
      •0•1•0•0•Updated Mar 14, 2025Mar 14, 2025

    • coin-or-clp-java-api

      Public
      ILP solver API for FragTree computation using the coin-or CLP library
      JetBrains MPS
      •
      Eclipse Public License 1.0
      •1•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • standardizeUtils

      Public
      A Python package for standardizing SMILES and InChI strings with RDKit and PubChem
      Python
      •1•6•0•0•Updated Oct 21, 2024Oct 21, 2024

    • myopic-mces

      Public
      Computation of myopic MCES distance
      Python
      •
      MIT License
      •7•1•0•0•Updated Oct 8, 2024Oct 8, 2024

    • myopic-mces-data

      Public
      Python
      •2•5•0•0•Updated Sep 21, 2024Sep 21, 2024

    • docs.sirius.github.io

      Public archive
      4•4•0•0•Updated Sep 6, 2024Sep 6, 2024

    • ftree-msn

      Public
      Java code for MSn fragmentation tree computation as described in Scheubert et al.: https://doi.org/10.1007/978-3-662-44753-6_17
      Java
      •
      GNU Lesser General Public License v3.0
      •1•0•0•0•Updated Apr 21, 2021Apr 21, 2021

    • Rsirius

      Public archive
      sirius-apis
      R
      •
      MIT License
      •0•3•0•0•Updated Oct 28, 2020Oct 28, 2020

    • gecko

      Public
      The official repository of the gecko gene cluster software
      Java
      •
      GNU Lesser General Public License v3.0
      •1•1•0•0•Updated Nov 5, 2018Nov 5, 2018

    • bcd-supertrees

      Public
      The bcd supertrees algorithm implemented in java as a command line tool.
      javasciencebioinformaticsalgorithmscientific-computingsupertreesphylogenecis
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 15, 2018Aug 15, 2018

    • mzmine2

      Public
      MZmine 2 source repository
      Java
      •
      GNU General Public License v2.0
      •129•0•0•0•Updated Apr 22, 2018Apr 22, 2018

    • gscm-supertrees

      Public
      Greedy Strict Consensus Merger Project: containing the algorithmic part (gscm-lib) and the comandline tool (gscm-cli))
      javasciencealgorithmphylogeneticsscientific-computingsupertrees
      Java
      •
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Sep 14, 2017Sep 14, 2017

    • passatuto

      Public
      source code of passatuto by Kerstin Scheubert
      Java
      •
      GNU General Public License v3.0
      •1•10•0•0•Updated Jan 20, 2017Jan 20, 2017
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