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    130 repositories

    • medagents-benchmark

      Public
      MedAgentsBench: Benchmarking Thinking Models and Agent Frameworks for Complex Medical Reasoning
      Jupyter Notebook
      •
      MIT License
      •5•46•5•0•Updated Jul 3, 2025Jul 3, 2025

    • ML-Bench

      Public
      ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Code (https://arxiv.org/abs/2311.09835)
      code-generationgpt-4llm
      Python
      •
      MIT License
      •9•301•0•0•Updated Jul 2, 2025Jul 2, 2025

    • ASTRO

      Public
      Python
      •3•6•0•1•Updated Jun 29, 2025Jun 29, 2025

    • CellForge

      Public
      Python
      •0•1•0•0•Updated Jun 23, 2025Jun 23, 2025

    • BC-Design

      Public
      BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding
      protein-structurecomputational-biologyproteinprotein-surfaceinverse-design
      Python
      •
      Apache License 2.0
      •0•13•1•0•Updated Jun 3, 2025Jun 3, 2025

    • chronODE

      Public
      Python
      •0•3•0•0•Updated Jun 2, 2025Jun 2, 2025

    • cbb752b25

      Public
      CSS
      •0•0•0•0•Updated May 19, 2025May 19, 2025

    • LocAgent

      Public
      [ACL 2025] Graph-guided agentic framework for code localization
      Python
      •
      Apache License 2.0
      •62•456•8•0•Updated May 1, 2025May 1, 2025

    • QVAE

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • ChemAgent

      Public
      [ICLR 2025]ChemAgent: Self-updating Library in Large Language Models Improves Chemical Reasoning
      Python
      •10•60•2•0•Updated Mar 11, 2025Mar 11, 2025

    • epiPgene

      Public
      0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • HEPRS

      Public
      Go
      •
      MIT License
      •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • cbb752b16

      Public
      CBB752 (Spr. '16) - Bioinformatics: Practical Application of Data Mining & Simulation
      HTML
      •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • .github

      Public
      This is the repo for the public organization profile.
      MIT License
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • cbb752b23

      Public
      CSS
      •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • Bay2Ctrls

      Public
      R
      •
      Other
      •0•0•0•0•Updated Dec 27, 2024Dec 27, 2024

    • MOBI

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Dec 27, 2024Dec 27, 2024

    • ABCD

      Public
      R
      •0•3•0•0•Updated Dec 16, 2024Dec 16, 2024

    • fmgene

      Public
      0•0•0•0•Updated Dec 15, 2024Dec 15, 2024

    • cbb752b20

      Public
      CSS
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • GenAI4Drug

      Public
      [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design
      moleculeproteindrug-discoverygenai
      6•85•0•0•Updated Nov 30, 2024Nov 30, 2024

    • MIMIR

      Public
      Python
      •0•3•0•0•Updated Nov 10, 2024Nov 10, 2024

    • ProteinGraph_construction

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Nov 5, 2024Nov 5, 2024

    • PPT

      Public
      Jupyter Notebook
      •0•2•1•0•Updated Sep 16, 2024Sep 16, 2024

    • GraphPartition_SBGNN

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Aug 20, 2024Aug 20, 2024

    • entexBERT-paper

      Public
      Python
      •0•1•0•0•Updated Aug 17, 2024Aug 17, 2024

    • step-back-profiling

      Public
      llmspersonalized-generation
      Jupyter Notebook
      •
      MIT License
      •0•4•1•0•Updated Aug 2, 2024Aug 2, 2024

    • shiny-dim-reduction

      Public
      This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.
      R
      •0•2•0•0•Updated Jul 28, 2024Jul 28, 2024

    • LatentDAG

      Public
      Jupyter Notebook
      •
      Other
      •0•3•1•0•Updated Jul 22, 2024Jul 22, 2024

    • MolLM

      Public
      A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations
      Python
      •1•21•2•0•Updated Jul 19, 2024Jul 19, 2024
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