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@obiba Open Source Software for Epidemiology

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    132 repositories

    • opal

      Public
      OBiBa’s core database application for biobanks or epidemiological studies.
      Java
      •
      GNU General Public License v3.0
      •22•31•24•0•Updated Jul 13, 2025Jul 13, 2025

    • helm-charts

      Public
      OBiBa Helm Charts
      Smarty
      •
      MIT License
      •0•0•0•0•Updated Jul 13, 2025Jul 13, 2025

    • opal-doc

      Public
      Opal documentation
      Python
      •2•2•1•0•Updated Jul 13, 2025Jul 13, 2025

    • docker-opal

      Public
      Shell
      •
      GNU General Public License v3.0
      •12•7•5•0•Updated Jul 13, 2025Jul 13, 2025

    • obiba-commons

      Public
      Reusable code for persistence, security and spring.
      Java
      •9•5•0•0•Updated Jul 11, 2025Jul 11, 2025

    • agate

      Public
      OBiBa's user ID provider.
      Java
      •
      GNU General Public License v3.0
      •7•4•4•0•Updated Jul 11, 2025Jul 11, 2025

    • rock

      Public
      R server with a REST API
      Java
      •
      GNU General Public License v3.0
      •1•3•1•2•Updated Jul 10, 2025Jul 10, 2025

    • mica2

      Public
      Mica is a web portal for epidemiological study consortia.
      Java
      •
      GNU General Public License v3.0
      •15•11•64•16•Updated Jul 7, 2025Jul 7, 2025

    • obiba.github.io

      Public
      Obiba Website
      HTML
      •2•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • agate-python-client

      Public
      Python command lines for accessing Agate web services.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • mica-python-client

      Public
      Python command lines for accessing Mica web services.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•2•Updated Jun 16, 2025Jun 16, 2025

    • opal-python-client

      Public
      Python command lines for accessing Opal web services.
      Python
      •
      GNU General Public License v3.0
      •3•4•1•1•Updated Jun 15, 2025Jun 15, 2025

    • magma

      Public
      Data and meta-data abstraction layer.
      Java
      •
      GNU General Public License v3.0
      •14•6•0•0•Updated Jun 14, 2025Jun 14, 2025

    • docker-amber

      Public
      Docker images for Amber server and apps
      Dockerfile
      •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • amber-collect

      Public
      Data collection app for Amber
      vuequasar
      Vue
      •
      MIT License
      •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • amber-template

      Public template
      Amber server with client apps, as Docker images to build.
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • amber-visit

      Public
      Amber client app for collecting interview data
      JavaScript
      •
      MIT License
      •0•0•1•0•Updated Jun 7, 2025Jun 7, 2025

    • amber

      Public
      Data collection server
      nodejsjavascriptmongodb
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jun 7, 2025Jun 7, 2025

    • amber-studio

      Public
      Content management app for Amber
      vuequasar
      Vue
      •
      MIT License
      •1•1•5•0•Updated Jun 7, 2025Jun 7, 2025

    • obiba-home

      Public
      Obiba development environment
      HTML
      •2•0•0•0•Updated Jun 6, 2025Jun 6, 2025

    • docker-rock

      Public
      Rock R server in a Docker container
      Shell
      •0•0•0•0•Updated May 23, 2025May 23, 2025

    • opalr

      Public
      Opal R and Datashield utils
      R
      •3•3•3•0•Updated May 23, 2025May 23, 2025

    • docker-r

      Public
      Docker image with R inside and a lot of system libs
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 23, 2025May 23, 2025

    • amberr

      Public
      Amber R client
      R
      •0•0•0•0•Updated May 15, 2025May 15, 2025

    • docker-agate

      Public
      Shell
      •
      GNU General Public License v3.0
      •3•0•1•0•Updated May 9, 2025May 9, 2025

    • docker-mica

      Public
      Shell
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated May 8, 2025May 8, 2025

    • rock-spawner

      Public
      Rock server pod spawner in a Kubernetes environment
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 30, 2025Apr 30, 2025

    • mica-doc

      Public
      Mica documentation
      Python
      •2•0•1•0•Updated Apr 16, 2025Apr 16, 2025

    • mica-search-es8

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Apr 14, 2025Apr 14, 2025

    • plugins

      Public
      OBiBa plugins repository
      0•0•0•0•Updated Feb 11, 2025Feb 11, 2025
    0