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@lina-usc Laboratory for Integrative Neuroscience Analysis @ UofSC

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    39 repositories

    • lina-usc.github.io

      Public
      Code for the LINA website.
      JavaScript
      •
      MIT License
      •43k•0•0•0•Updated Jun 29, 2025Jun 29, 2025

    • scinbre-python-2025

      Public
      Jupyter Notebook
      •
      MIT License
      •5•3•0•2•Updated May 23, 2025May 23, 2025

    • pylossless

      Public
      🧠 EEG Processing pipeline that annotates continuous data
      pythonneuroscienceeeg
      Jupyter Notebook
      •
      MIT License
      •11•35•43•1•Updated May 7, 2025May 7, 2025

    • q1k_grands

      Public
      notebooks for exploring grand summaries of Q1K tasks
      Jupyter Notebook
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • q1k_autorej

      Public
      Tools for performing auto rejection on MNE epoch objects of the Q1K project
      Jupyter Notebook
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • q1k_segment

      Public
      Segmentation procedures for Q1K tasks
      Jupyter Notebook
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • q1k_sync_loss

      Public
      QIK procedures for syncronizing EEG lossless state with ET data and puring artifacts from Lossless annotations..
      Jupyter Notebook
      •0•1•0•0•Updated Mar 18, 2025Mar 18, 2025

    • q1k_submit_pylossless

      Public
      tools for submitting the pylossless pipeline on q1k data at the Narval compute cluster
      Python
      •0•1•0•0•Updated Mar 18, 2025Mar 18, 2025

    • q1k_eeget_init

      Public
      Initialization code for the EEG/ET data from the Q1K project.
      Jupyter Notebook
      •
      MIT License
      •2•4•1•0•Updated Mar 18, 2025Mar 18, 2025

    • Jansen-Rit-Model-Benchmarking-Deep-Learning

      Public
      Code repositry for the Benchmarking Deep Jansen-Rit Parameter Inference: An in Silico Study
      Jupyter Notebook
      •
      MIT License
      •0•1•2•0•Updated Mar 8, 2025Mar 8, 2025

    • contourusv

      Public
      Python
      •1•1•2•2•Updated Mar 2, 2025Mar 2, 2025

    • eog-learn

      Public
      Exploratory tool for regressing EOG artifact from MEEG with simultaneous Eyetracking
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•5•0•Updated Jan 18, 2025Jan 18, 2025

    • q1k_postproc_erp

      Public
      Tools for generating ERPs from the q1k data set
      Jupyter Notebook
      •1•1•0•0•Updated Jan 9, 2025Jan 9, 2025

    • q1k_eeg_et_protocol

      Public
      Code for the Q1K EEG-ET experimental protocol
      MIT License
      •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • q1k

      Public
      Package containing code useful for the analysis of the data from the Quebec 1000 Families project.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

    • cona2014_nmm

      Public
      Python implementation of the thalamocortical model proposed by Cona et al (2014)
      Python
      •
      MIT License
      ••0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • comp_neurosci_videos

      Public
      Manim-based videos on computational neuroscience
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

    • cmc

      Public
      Canonical Micro-Circuit for multiscale modeling of the brain.
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jun 23, 2024Jun 23, 2024

    • scinbre-python-2024

      Public
      Jupyter Notebook
      •
      MIT License
      •5•3•2•0•Updated Jun 14, 2024Jun 14, 2024

    • csce590

      Public
      Python code for the UofSC couse CSCE 590: Analysis of neuroscience data
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • eog-learn-bck

      Public
      Exploratory tool for regressing EOG artifact from MEEG with simultaneous Eyetracking
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Jan 21, 2024Jan 21, 2024

    • conie

      Public
      Plotly Dash Components for NeuroImaging and Electrophysiology (CONIE)
      Python
      •
      MIT License
      •11•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • asd_infants_eeg_con_paper

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Aug 25, 2023Aug 25, 2023

    • paper-jsleepres-2023

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 25, 2023Jul 25, 2023

    • ECG-ASD-Likelihood-Classification

      Public
      Code for the paper ECG Recordings as Predictors of very early Autism Likelihood: A Machine Learning Approach
      Jupyter Notebook
      •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

    • acareeg

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • ecg_paper

      Public
      Repository for the paper "Model-driven analysis of ECG using reinforcement learning".
      Jupyter Notebook
      •0•1•0•0•Updated Jun 7, 2023Jun 7, 2023

    • uscusv

      Public
      Functions developed for USV (Ultrasonic vocalization) analysis at O'Reilly's lab, Institute of Artificial Intelligence of South Carolina, University of South Carolina.
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • libNeuroML

      Public
      This package provides Python libNeuroML, for working with neuronal models specified in NeuroML
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •33•0•0•0•Updated Nov 29, 2022Nov 29, 2022

    • nmodl

      Public
      Code Generation Framework For NEURON MODeling Language
      C++
      •
      Other
      •16•0•0•0•Updated Oct 14, 2022Oct 14, 2022
    0