8000 metagentools repositories · GitHub

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8 repositories

gbintk
Public
🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit
bioinformatics metagenomics assembly-graph contigs metagenomic-binning
Python
•
GNU General Public License v3.0
•5•8•0•0•Updated May 29, 2025May 29, 2025
GraphBin
Public
✨🧬 Refined binning of metagenomic contigs using assembly graphs
metagenomics binning assembly-graph label-propagation contigs
Python
•
BSD 3-Clause "New" or "Revised" License
•7•92•5•1•Updated Mar 6, 2025Mar 6, 2025
GraphBin2
Public
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
metagenomics binning contigs assembly-graphs overlapped-binning
Python
•
BSD 3-Clause "New" or "Revised" License
•3•34•7•1•Updated Mar 6, 2025Mar 6, 2025
VStrains
Public
VStrains is a de novo approach for reconstructing strains from viral quasispecies.
viral-metagenomics short-reads
Python
•
MIT License
•6•23•1•0•Updated Feb 5, 2025Feb 5, 2025
MetaCoAG
Public
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
metagenomics binning contigs assembly-graphs
Python
•
GNU General Public License v3.0
•7•63•12•0•Updated Sep 26, 2024Sep 26, 2024
metagenomic_binning_review
Public
Code used to analyse and plot metadata of metagenomic binning tools
Jupyter Notebook
•
MIT License
•1•14•0•0•Updated Aug 22, 2024Aug 22, 2024
ConDiGA
Public
🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics
Python
•
MIT License
•2•6•2•0•Updated Jul 7, 2024Jul 7, 2024
metagenomic-database-utilities
Public
Scripts used to create metagenomic databases for metaproteomic analysis
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

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