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    85 repositories

    • Swate

      Public
      Excel Add-In for annotation of experimental data and computational workflows.
      educationbiologyontologyisaresearch-data-managementrdmminimal-information
      F#
      •
      MIT License
      •8•40•28•2•Updated May 28, 2025May 28, 2025

    • ARCtrl

      Public
      Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.
      fsharpisaarccwlrdmfair-datafable-librariesro-crate
      F#
      •
      MIT License
      •9•18•37•2•Updated May 28, 2025May 28, 2025

    • elab2arc

      Public
      A tool to convert electronic lab notebook experiments to Annotated Research Context (ARC) assays
      HTML
      •
      GNU General Public License v3.0
      •2•0•1•0•Updated May 28, 2025May 28, 2025

    • dataplan

      Public template
      DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT
      documentgeneration
      JavaScript
      •
      GNU General Public License v3.0
      •10•7•4•0•Updated May 28, 2025May 28, 2025

    • arc-wr-ro-crate-profile

      Public
      MIT License
      •0•0•11•1•Updated May 28, 2025May 28, 2025

    • ARCitect

      Public
      Cross-platform app to create and manage ARCs.
      Vue
      •7•9•38•0•Updated May 28, 2025May 28, 2025

    • swate-template-registry

      Public
      A collection of templates for Swate (https://github.com/nfdi4plants/Swate).
      C#
      •
      MIT License
      •19•5•10•1•Updated May 27, 2025May 27, 2025

    • ARCSummary

      Public
      Library to create or update markdown content of ARCs dynamically
      F#
      •2•2•7•0•Updated May 27, 2025May 27, 2025

    • nfdi4plants.knowledgebase

      Public
      This is the source repo for the nfdi4plants knowledge base webpage.
      slidestutorialsfaqhow-toknowledge-baseguides
      MDX
      •
      Creative Commons Attribution 4.0 International
      •32•4•5•0•Updated May 27, 2025May 27, 2025

    • arcmanager_backend

      Public
      FastAPI backend for the ARCmanager.
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • arcmanager_frontend

      Public
      Web-based application for creating and managing your ARCs directly on the DataHUB.
      Vue
      •
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated May 27, 2025May 27, 2025

    • nfdi4plants_ontology

      Public
      An intermediate ontology for plants used by DataPLANT to fill the ontology gap
      ontologybrokernfdi4plantsdataplantdbpo
      F#
      •
      Creative Commons Attribution 4.0 International
      •11•7•3•1•Updated May 27, 2025May 27, 2025

    • arc-validate

      Public
      Libraries and CLI tools for creation, consumption, and execution of ARC validation packages
      dockerunit-testingvalidationexpecto 8000 fsharpdotnetarcnfdi4plantsdataplantisa-dotnet
      F#
      •
      MIT License
      •3•4•19•10•Updated May 26, 2025May 26, 2025

    • nfdi4plants.github.io

      Public
      DataPLANT website made with Astro 🚀
      Astro
      •
      MIT License
      •17•5•3•1•Updated May 26, 2025May 26, 2025

    • arc-validate-package-registry

      Public
      A repository of validation packages for ARCs
      F#
      •
      MIT License
      •4•3•17•0•Updated May 22, 2025May 22, 2025

    • training-material

      Public
      Training material of DataPLANT workshops and classes
      HTML
      •
      Creative Commons Attribution 4.0 International
      •4•0•1•0•Updated May 21, 2025May 21, 2025

    • archigator-backend

      Public
      Archigator, a publicaton tool from Gitlab to Invenio
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•2•0•Updated Apr 29, 2025Apr 29, 2025

    • BOAT-Builder-for-Ontology-ARC-Tables

      Public
      This tool/website is for a user friendly creating of an ARC template (essay or study) out of your free text protocols with self-annotated ontology labeled terms. These templates can be used in your ARC afterwards.
      F#
      •0•2•8•0•Updated Apr 29, 2025Apr 29, 2025

    • ena2swate

      Public
      Generate SWATE template from ENA checklists
      CSS
      •1•0•0•0•Updated Apr 28, 2025Apr 28, 2025

    • ARCTokenization

      Public
      Definition of controlled vocabulary tokens and library to tokenize ARC metadata into these tokens
      F#
      •
      MIT License
      •2•4•11•4•Updated Apr 25, 2025Apr 25, 2025

    • DataHUB

      Public
      This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.
      Shell
      •
      MIT License
      •3•4•22•0•Updated Apr 24, 2025Apr 24, 2025

    • arc-export

      Public
      Containerized CLI tool for exporting ARCs to other formats such as ISA-JSON or RO-Crate
      F#
      •
      MIT License
      •0•3•3•7•Updated Apr 21, 2025Apr 21, 2025

    • arc-to-invenio

      Public
      Automatic building of a Docker container for converting ARCs to Invenio Metadata
      F#
      •
      MIT License
      •0•2•10•5•Updated Apr 18, 2025Apr 18, 2025

    • ARCCommander

      Public
      CLI tool to manage your ARCs
      F#
      •
      MIT License
      •9•12•26•1•Updated Apr 15, 2025Apr 15, 2025

    • ARC-specification

      Public
      13•16•21•0•Updated Apr 11, 2025Apr 11, 2025

    • actions-workflows

      Public
      reusable github actions tailored for our needs
      0•1•0•0•Updated Mar 27, 2025Mar 27, 2025

    • arc-datamap-ro-crate-profile

      Public
      MIT License
      •0•0•3•0•Updated Mar 25, 2025Mar 25, 2025

    • isa-ro-crate-profile

      Public
      MIT License
      •0•5•5•0•Updated Mar 11, 2025Mar 11, 2025

    • arc-to-rocrate

      Public
      F#
      •1•2•3•0•Updated Feb 14, 2025Feb 14, 2025

    • arc-validation-packages

      Public
      ARC validation packages for https://avpr.nfdi4plants.org maintained by DataPLANT
      F#
      •
      MIT License
      •0•2•1•0•Updated Feb 12, 2025Feb 12, 2025
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