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    18 repositories

    • nfcore-crisprseq-data

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 26, 2025May 26, 2025

    • Processor_specifications_collector

      Public
      Collects specifications of Intel, AMD and more processors and summarizes them in one file
      Groovy
      •
      MIT License
      •1•0•0•0•Updated May 22, 2025May 22, 2025

    • prometainfer

      Public
      Official repository for ProMetaInfer: A tool for inferring missing metadata in proteomics data using machine learning and database search.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 9, 2025Apr 9, 2025

    • BIOPM_helper_scripts

      Public
      Small helper scripts for data transformation and analysis
      Python
      •1•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • MetaAnalyzer

      Public
      MetaAnalyzer is a tool to analyze and aggregate human-derived metadata of the metadata schemes for the DZIF microbial OMICs database.
      metadataanalyzeaggregationomicsdzif
      JavaScript
      •
      MIT License
      •1•1•0•0•Updated Sep 6, 2024Sep 6, 2024

  • Microbial-OMICs

    Public
    Metadata schemes implemented in LinkML for the DZIF microbial OMICs database plus building scripts for the DZIF DataHarmonizer.
    metadataomicslinkmldzifdataharmonizer
    Python
    •
    MIT License
    •1•1•0•0•Updated Sep 3, 2024Sep 3, 2024

  • DZIFDataHarmonizer

    Public
    JavaScript
    •
    MIT License
    •31•1•0•0•Updated Sep 3, 2024Sep 3, 2024

  • QOOBR

    Public
    Data analysis QOOBR
    HTML
    •4•0•0•0•Updated May 20, 2024May 20, 2024

  • nanoseq-qxstt

    Public
    Nanopore demultiplexing, QC and alignment pipeline
    Nextflow
    •
    MIT License
    •95•0•0•1•Updated May 17, 2024May 17, 2024

  • QSARK

    Public
    Data analysis for sarek paper
    PostScript
    •
    MIT License
    •0•2•0•0•Updated Feb 16, 2024Feb 16, 2024

  • rnaseq-benchmark

    Public
    Comparison of the output of different versions of the nf-core/rnaseq pipeline for 3 datasets containing ERCC spike-ins
    HTML
    •
    MIT License
    •0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

  • MS-cladribine-study

    Public
    Data analysis QMKMK-clad
    HTML
    •4•0•0•0•Updated Oct 10, 2023Oct 10, 2023

  • qfendcnv

    Public
    Nextflow
    •
    MIT License
    •0•0•0•0•Updated Sep 4, 2023Sep 4, 2023

  • r-project-template

    Public template
    R project template
    HTML
    •
    MIT License
    •2•2•0•0•Updated Feb 16, 2023Feb 16, 2023

  • anovaget-shiny

    Public
    R
    •
    MIT License
    •1•0•0•0•Updated Jan 25, 2023Jan 25, 2023

  • QSCNN

    Public
    Differential gene expression analysis and of miRNA-seq data for project QSCNN
    R
    •
    MIT License
    •22•0•0•0•Updated Oct 25, 2022Oct 25, 2022

  • sarek-QSTHO

    Public
    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
    Nextflow
    •
    MIT License
    •446•0•0•0•Updated Feb 25, 2022Feb 25, 2022

  • smrnaseq

    Public
    A small-RNA sequencing analysis pipeline (forked from Kevin Menden with fixes for trimming parameters)
    Nextflow
    •
    MIT License
    •126•0•0•0•Updated Jun 15, 2021Jun 15, 2021
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