8000 weissmanlab repositories · GitHub

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weissmanlab

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21 repositories

msprime-c
Public
Simulate genealogical trees and genomic sequence data using population genetic models
Jupyter Notebook
•
GNU General Public License v3.0
•88•0•0•0•Updated Jul 2, 2025Jul 2, 2025
weissmanlab.github.io
Public
Weissman lab website
SCSS
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MIT License
•35k•0•0•0•Updated Jan 20, 2025Jan 20, 2025
rotation_erekle
Public
data files and code for figure 1,2,3,4
Python
•0•0•0•0•Updated Dec 5, 2024Dec 5, 2024
malaria_proj
Public
C++
•0•0•0•0•Updated Sep 7, 2024Sep 7, 2024
decotur
Public
R
•1•0•0•0•Updated Sep 3, 2024Sep 3, 2024
Genetic_Diversity_Space
Public
Repo for "The allele frequency spectrum in spatially structured populations"
Jupyter Notebook
•2•0•0•0•Updated Apr 12, 2024Apr 12, 2024
SFS_spatial_sweep_1d_Genetics
Public archive
Code for Genetics figures
Jupyter Notebook
•1•0•0•0•Updated Dec 16, 2023Dec 16, 2023
VOC_emergence
Public
Modeling the emergence of SARS-CoV-2 VOCs
Mathematica
•
GNU General Public License v3.0
•1•0•0•0•Updated Aug 8, 2023Aug 8, 2023
magic
Public
Minimal Assumption Genomic Inference of Coalescence
Jupyter Notebook
•
MIT License
•2•14•2•0•Updated Aug 8, 2023Aug 8, 2023
synchronized-sex-dispersal
Public
Code for the Paper 'Population structure can reduce clonal interference when sexual reproduction and dispersal are synchronized'
Mathematica
•0•0•0•0•Updated Jul 12, 2023Jul 12, 2023
SFS_spatial_sweep
Public
Jupyter Notebook
•1•0•0•0•Updated Mar 8, 2023Mar 8, 2023
DeCoTUR_manuscript_code
Public
0•0•0•0•Updated Feb 2, 2023Feb 2, 2023
Robust_evolution_of_altruism_based_on_similarity_of_complex_phenotypes
Public
Simulation for the evolution of altruistic behavior where individuals decide to donate to each other by determining similarity of multidimensional phenotype
C
•0•0•0•0•Updated Jun 9, 2022Jun 9, 2022
Long_Range_Dispersal
Public
Mathematica
•0•0•0•0•Updated Jun 7, 2022Jun 7, 2022
Valley_Crossing
Public
Valley Crossing for covid
Mathematica
•
GNU General Public License v3.0
•1•0•0•0•Updated May 12, 2022May 12, 2022
BB_bottleneck
Public
R
•8•7•2•0•Updated May 10, 2021May 10, 2021
two-alleles-waves-regime-
Public
Two interfering alleles, both are waves
C++
•1•0•0•0•Updated Feb 18, 2019Feb 18, 2019
two-alleles-branching-regime
Public
Interference between a sweeping allele that propagates as a wave and an allele who is in the branching regime
C++
•1•0•0•0•Updated Feb 18, 2019Feb 18, 2019
Coalescent-Simulations
Public
Simulations of different coalescent models
Python
•0•0•0•0•Updated Nov 1, 2018Nov 1, 2018
magic-beta
Public
placeholder
0•0•0•0•Updated Jun 22, 2017Jun 22, 2017
Competition-between-valley-crossing-and-uphill-mutations-in-asexual-populations
Public
Python
•1•0•0•0•Updated Mar 31, 2017Mar 31, 2017

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