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18 repositories

oktoberfest
Public
Rescoring and spectral library generation pipeline for proteomics.
Python
•
MIT License
•10•43•32•2•Updated May 20, 2025May 20, 2025
spectrum_io
Public
IO related functionalities for oktoberfest.
Python
•
MIT License
•4•2•1•3•Updated May 20, 2025May 20, 2025
spectrum_fundamentals
Public
Fundamentals public repo
Python
•
MIT License
•2•9•1•1•Updated May 20, 2025May 20, 2025
koina
Public
Democratizing ML in proteomics
python machine-learning bioinformatics deep-learning proteomics mass-spectrometry
Jupyter Notebook
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Apache License 2.0
•19•37•5•3•Updated May 19, 2025May 19, 2025
SWAPS
Public
Scan-Wise Activation and Peak Selection (SWAPS)
Jupyter Notebook
•
MIT License
•0•5•0•1•Updated May 9, 2025May 9, 2025
dlomix
Public
Python framework for Deep Learning in Proteomics
machine-learning framework deep-learning proteomics mass-spectrometry peptides peptide-sequences
Jupyter Notebook
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MIT License
•10•27•2•2•Updated Apr 28, 2025Apr 28, 2025
biowc-core
Public
Core plotting web components
Vue
•
Apache License 2.0
•1•6•2•0•Updated Mar 26, 2025Mar 26, 2025
dlomix-resources
Public
Jupyter Notebook
•
MIT License
•3•2•0•0•Updated Jan 23, 2025Jan 23, 2025
koinar
Public
Koina R client
R
•1•1•0•1•Updated Jan 9, 2025Jan 9, 2025
rowwisenorm
Public
Row-wise normalization R package
R
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MIT License
•0•0•0•0•Updated Sep 22, 2024Sep 22, 2024
proteomicsdb-vue
Public
Vue
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Apache License 2.0
•0•0•1•0•Updated Sep 17, 2024Sep 17, 2024
PROSPECT
Public
Proteomics Mass Spectrometry Datasets for Machine Learning
spectrum machine-learning deep-learning annotations dataset proteomics mass-spectrometry ptm peptides retention-time
Python
•
MIT License
•3•16•0•0•Updated Aug 16, 2024Aug 16, 2024
omics_norm_shiny
Public
R
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MIT License
•0•0•0•0•Updated Dec 13, 2023Dec 13, 2023
protvista-proteomicsdb
Public archive
JavaScript
•0•0•0•0•Updated Aug 30, 2023Aug 30, 2023
proteomicsdb-components
Public archive
Vue
•0•0•0•0•Updated Aug 30, 2023Aug 30, 2023
proteomicsdb-wrappers
Public archive
Vue
•0•0•0•0•Updated Aug 30, 2023Aug 30, 2023
proteomicsdb-views
Public archive
CSS
•0•0•0•0•Updated Aug 30, 2023Aug 30, 2023
prosit_grpc
Public
Public repo for prosit_grpc
Python
•
MIT License
•0•0•0•6•Updated May 11, 2023May 11, 2023

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