ATGENOMIX
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deepvariant-on-spark
deepvariant-on-spark PublicDeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
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deepvariant
deepvariant PublicForked from google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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connectedreads
connectedreads Publica machine-learning optimized long-range genome analysis workflow for next-generation sequencing
Scala 1
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seqslab-plugin-api
seqslab-plugin-api PublicJava library that provides a framework for creating and managing plugins in the SeqsLab environment.
Java 1
Repositories
- oncoexpr Public
An interactive R Shiny application for RNA-seq data analysis built with Spark backend support. It offers high-performance DEG analysis, real-time visualization (volcano plots, heatmaps), PCA, and functional enrichment (GO, KEGG, GSEA) in a modular, reactive framework.
atgenomix/oncoexpr’s past year of commit activity - seqslab-plugin-api Public
Java library that provides a framework for creating and managing plugins in the SeqsLab environment.
atgenomix/seqslab-plugin-api’s past year of commit activity - kneaddata Public Forked from biobakery/kneaddata
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
atgenomix/kneaddata’s past year of commit activity - seqslab-operators Public
Atgenomix Operators are SeqsLab platform plugins and open-source Cromwell extensions that streamline heterogeneous data integration and transformation, and scale complex workflow tasks, using distributed computing clusters and GPU accelerators.
atgenomix/seqslab-operators’s past year of commit activity - support Public
atgenomix/support’s past year of commit activity
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