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Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
⭕ Share quick reference cheat sheet for developers.
MariaNattestad / dot
Forked from dsommer/dotDot: An interactive dot plot viewer for comparative genomics
Transparent calculations with uncertainties on the quantities involved (aka "error propagation"); calculation of derivatives.
Sphinx documentation source for a computational genomics tutorial.
Visualize and compare datasets, target values and associations, with one line of code.
A fast and scalable phylogenetic tree viewer for microbiome data analysis
Tutorials on phylogenetic and phylogenomic inference
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
A toolbox for improving metagenome-assembled genomes.
Python package for common tasks in bioinformatic.
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
Fast genome and metagenome distance estimation using MinHash
Rapid determination of appropriate reference genomes.
analysis of biosamples in INSDC
A Zotero plugin to export item metadata and notes as markdown files
A flexible pipeline for complete analysis of bacterial genomes
Create beautiful diagrams just by typing notation in plain text.
Demonstrating best practices for bioinformatics command line tools
KnetMaps: a BioJS component to visualize biological knowledge networks
A collection of types of genomic signals different people plot
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Updated May 21, 2025
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes