8000 Issues · aertslab/pySCENIC · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

Issues: aertslab/pySCENIC

Possible solutions for GRNBoost2/GENIE3 Dask issues
#163 opened May 1, 2020 by cflerin
Open 2
pySCENIC for other species
#172 by singcell was closed Apr 11, 2022
Closed 3
Aggregating results across pySCENIC runs
#169 by diegoalexespi was closed Feb 18, 2021
Closed 6
Beta
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

221 Open 346 Closed
221 Open 346 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Manually Adding ChIP-Seq Data
#619 opened May 28, 2025 by rayajallad
[results] After df2regulons(), gene name formatting in each regulon is weird question Further information is requested
#618 opened May 28, 2025 by redbybeing
Issue with the "Intersection of gene_names and tf_names is empty" while running the grnboost2 step of pySCENIC in hpc
#616 opened May 24, 2025 by npees1
[BUG] Substantially different results when using AUCell vs pyscenic.aucell bug Something isn't working
#615 opened May 12, 2025 by PauBadiaM
Batch effet
#614 opened May 11, 2025 by RunyuXia
What do the (+) and (-) represent respectively? question Further information is requested
#613 opened Apr 21, 2025 by CampingOnSeabed
1
[BUG] Output directory is empty bug Something isn't working
#611 opened Apr 2, 2025 by Fugwaaaa
[BUG] My output directory don't have motif enrichment result tsv bug Something isn't working
#610 opened Mar 30, 2025 by Fugwaaaa
[BUG] pyscenic grn errors: Resource temporarily unavailable & empty intersection bug Something isn't working
#609 opened Mar 18, 2025 by radiasso
8000
Empty Outputs
#608 opened Mar 7, 2025 by rayajallad
[BUG] bug Something isn't working
#607 opened Feb 25, 2025 by wuxiangning
WARNING: infer_data failed for target HSPA13' Retry (1/10). Failure caused by AttributeError("'csc_matrix' object has no attribute 'A'"). bug Something isn't working
#605 opened Feb 17, 2025 by CampingOnSeabed
3
broken link
#604 opened Feb 13, 2025 by ChrisSteel-bio
Empty DataFrame Columns: [(Enrichment, AUC), (Enrichment, NES), (Enrichment, MotifSimilarityQvalue), (Enrichment, OrthologousIdentity), (Enrichment, Annotation), (Enrichment, Context), (Enrichment, TargetGenes), (Enrichment, RankAtMax)] bug Something isn't working
#603 opened Feb 13, 2025 by juhi-ku
1
[BUG] problem with binarization not detecting bimodal correctly bug Something isn't working
#601 opened Jan 26, 2025 by Sirin24
[BUG] Non-transcription factor gene “Fgf15” found in mm_mgi_tfs.txt bug Something isn't working
#600 opened Jan 18, 2025 by Ashone1992
t-sne interpretation question Further information is requested
#599 opened Jan 9, 2025 by robertzeibich
1
t-sne on binary regulon activity question Further information is requested
#598 opened Jan 9, 2025 by robertzeibich
[BUG]ERROR - Expression matrix should be provided in the loom file format. bug Something isn't working
#597 opened Dec 16, 2024 by huangtao-china
1
very long run time for very large dataset bug Something isn't working
#596 opened Nov 22, 2024 by baptisteavot-ukdri
3
Results - After the "df2regulon" step of the tutorial question Further information is requested
#595 opened Nov 14, 2024 by LiorBaryo
binarization
#594 opened Nov 11, 2024 by Flu09
1
[BUG]TypeError: _bootstrap() takes 1 positional argument but 2 were given bug Something isn't working
#593 opened Nov 8, 2024 by chenfengQAQ
[BUG] TypeError: Must supply at least one delayed object bug Something isn't working
#592 opened Nov 5, 2024 by Achiraa
5
different targets different conditions
#591 opened Nov 4, 2024 by Sirin24
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.
0