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Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

Python 69 18 Updated Jan 31, 2024

Single cell Nanopore sequencing data for Genotype and Phenotype

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A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Python 1 Updated Jan 19, 2025

Visually distinctive characters on base-85 Cyrillic encoder and decoder

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Nightly build of Singularity containers

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The source for the Linux kernel used in Windows Subsystem for Linux 2 (WSL2)

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Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)

Python 10 2 Updated Mar 6, 2025

collaborative analysis framework for extremely large single-cell data

Python 1 Updated Dec 2, 2024

A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data

Python 5 Updated May 15, 2025

A Python manager class implementing a variety of file system operations in a spawned process, supporting AWS (and AWS-like systems), HTTP, and the local file system.

Python 1 Updated Nov 16, 2023

a collection of python scripts and functions for exploratory analysis of bioinformatic data in Python

Python 4 Updated Dec 3, 2024
HTML 1 Updated Jun 18, 2022

R toolkit for single cell genomics

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Single-cell analysis in Python. Scales to >100M cells.

Python 2,088 632 Updated May 17, 2025

HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.

Python 2,133 536 Updated May 16, 2025

data and model repository for single-cell data

Python 136 11 Updated Dec 21, 2023

a program to find cross-reactive epitopes with structural information from known protein structures.

HTML 3 1 Updated Aug 29, 2023
Jupyter Notebook 42 11 Updated Aug 13, 2024

scoreCT: Automated Cell Type Annotation

Jupyter Notebook 15 7 Updated Apr 18, 2022
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