8000 Dockerfile partial dependence plot by dsta-siminong · Pull Request #353 · aiverify-foundation/aiverify · GitHub
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Dockerfile partial dependence plot #353

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Merged
merged 2 commits into from
Oct 11, 2024
Merged

Dockerfile partial dependence plot #353

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4294603
Added Dockerfile for PDP
dsta-siminong Oct 11, 2024
ed71d5b
Minor changes to README
dsta-siminong Oct 11, 2024
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30 changes: 30 additions & 0 deletions ...gins/aiverify.stock.partial-dependence-plot/algorithms/partial_dependence_plot/Dockerfile
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FROM python:3.11-slim

RUN apt-get update \
&& apt-get upgrade -y \
&& apt-get install -y git gcc

# Install HDF5 using apt
RUN apt-get update && apt-get install -y libhdf5-dev pkg-config

RUN pip install --upgrade pip
RUN pip install --no-binary h5py h5py

WORKDIR /app/aiverify

# Copy test engine core folder to install requirements; in future we can install the test-engine-core pypi package
COPY aiverify-test-engine ./aiverify-test-engine

# Copy sample data to run pytest
COPY stock-plugins/user_defined_files ./stock-plugins/user_defined_files

# Copy algorithm folder
COPY stock-plugins/aiverify.stock.partial-dependence-plot/algorithms/partial_dependence_plot ./stock-plugins/aiverify.stock.partial-dependence-plot/algorithms/partial_dependence_plot

# Install algorithm requirements
WORKDIR /app/aiverify/stock-plugins/aiverify.stock.partial-dependence-plot/algorithms/partial_dependence_plot
RUN pip install pytest
RUN pip install -e '.[dev]'

ENTRYPOINT ["python3", "-m", "aiverify_partial_dependence_plot"]

36 changes: 36 additions & 0 deletions ...rify.stock.partial-dependence-plot/algorithms/partial_dependence_plot/README.md
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Expand Up @@ -70,3 +70,39 @@ Run the following steps to execute the unit and integration tests inside the `te
cd aiverify/stock-plugins/aiverify.stock.partial-dependence-plot/algorithms/partial_dependence_plot/
pytest .
```

## Run using Docker
In the aiverify root directory, run the below command to build the docker image
```sh
docker build -t aiverify-partial-dependence-plot:v2.0.0a1 -f stock-plugins/aiverify.stock.partial-dependence-plot/algorithms/partial_dependence_plot/Dockerfile .
```

Switch to the algorithm directory
```sh
cd stock-plugins/aiverify.stock.partial-dependence-plot/algorithms/partial_dependence_plot/
```

Run the below bash script to run the algorithm
```sh
#!/bin/bash

root_path="<PATH_TO_FOLDER>/aiverify/stock-plugins/user_defined_files"
docker run \
-v $root_path:/user_defined_files \
-v ./output:/app/aiverify/stock-plugins/aiverify.stock.partial-dependence-plot/algorithms/partial_dependence_plot/output \
aiverify-partial-dependence-plot:v2.0.0a1 \
--data_path /user_defined_files/data/sample_bc_credit_data.sav \
--model_path /user_defined_files/model/sample_bc_credit_sklearn_linear.LogisticRegression.sav \
--ground_truth_path /user_defined_files/data/sample_bc_credit_data.sav \
--ground_truth default \
--model_type REGRESSION \
--no-run_pipeline
```
If the algorithm runs successfully, the results of the test will be saved in an `output` folder in the algorithm directory.

## Tests
### Pytest is used as the testing framework.
Run the following steps to execute the unit and integration tests inside the `tests/` folder
```sh
docker run --entrypoint python3 aiverify-partial-dependence-plot:v2.0.0a1 -m pytest .
```
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