Stars
Python package to study microbial communities using metabolic modeling.
CarveMe: genome-scale metabolic model reconstruction
Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
Measures the concentration of specific infections (SIN) in a virus sample based on a TCID50 endpoint dilution assay.
is the room being used? (according to the timetable)
Mouse Jiggler is a very simple piece of software whose sole function is to "fake" mouse input to Windows, and jiggle the mouse pointer back and forth.
Pipe-friendly Framework for Basic Statistical Tests in R
A tool for generating consensus long-read assemblies for bacterial genomes
a short-read polishing tool for long-read assemblies
R package for microbiome biomarker discovery
Identification and classification of homopolymeric tracts from reads.
A library of free open source icons for science illustrations in biology and chemistry
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
A list of interesting genome browser and genome visualization programs
compare sequences to a shared root reference sequence.
This is an early version of POREquality, an R Markdown document designed to be ran as part of a Nanopore local basecalling pipeline.
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…