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An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)

Makefile 43 8 Updated Jun 30, 2025

System requirements for R packages

Shell 132 27 Updated May 27, 2025

Repo for downloading and storing OMIM data

Python 19 9 Updated Oct 6, 2016

Simple Makefile template for documenting frequent commands.

Makefile 52 3 Updated Jun 26, 2022

Bayesian OWL ontology merging

Scala 31 2 Updated Jun 4, 2025

SPARQL dev Community Group

124 21 Updated May 2, 2025

🐨 Make a subset of ORCID available as an OWL ontology

Python 2 1 Updated Jul 6, 2025

An open source gazetteer constructed on ontological principles

Makefile 7 5 Updated May 25, 2023

A library for creating complex UpSet plots with ggplot2 geoms

Jupyter Notebook 514 31 Updated Mar 9, 2024

Ontology Lookup Service from SPOT at EBI

JavaScript 98 40 Updated Apr 28, 2023

A new version of DO.db

R 4 4 Updated Oct 12, 2022

Collect of SO Ontologies

Makefile 100 37 Updated Nov 18, 2024

The source code of Infectious Disease Ontology (IDO)

6 2 Updated May 13, 2020

Repository for representing genotypes and their association with phenotypes

Makefile 18 6 Updated Oct 12, 2023

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

HTML 50 20 Updated Jun 23, 2025

Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds.

47 10 Updated Apr 20, 2022

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

Emacs Lisp 141 34 Updated Jul 7, 2025

An ontology of cell types

Makefile 177 53 Updated Jul 8, 2025

Ontology for the description of human clinical features

Makefile 313 55 Updated Jul 1, 2025

Build for NCBITaxon

Python 29 7 Updated Mar 17, 2025

Customizable translation of OBO graphs to dot for visualization using graphviz and other tools

JavaScript 26 6 Updated Feb 21, 2025

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Python 179 212 Updated Jul 1, 2025

A system for managing OBO PURLs

Python 83 130 Updated Jul 7, 2025
HTML 12 2 Updated Dec 1, 2024

Markdown Cheatsheet for Github Readme.md

5,099 6,323 Updated May 19, 2024

Update (i.e. commit and push) files on GitHub

TypeScript 41 10 Updated Dec 19, 2024

Generates GraphML from OWL ontologies

Java 3 Updated Apr 30, 2021

Helper tools for GitHub

Python 2 3 Updated Sep 9, 2024

talk with NCBI entrez using R

R 204 39 Updated Jul 5, 2025
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