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@allenlab

Andrew E. Allen Lab

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  1. QIIME2_16S_ASV_protocol QIIME2_16S_ASV_protocol Public

    14 4

  2. QIIME2_18Sv9_ASV_protocol QIIME2_18Sv9_ASV_protocol Public

    4 2

  3. PhyloDB PhyloDB Public

    Reference database suitable for comprehensive annotation of metagenomic and metatranscriptomic data.

    3 2

  4. PhyloMetarep PhyloMetarep Public

    A branch of METAREP for comparative genomics based on PhyloDB annotation

    PHP

  5. slacTree slacTree Public

    Forked from mccrowjp/slacTree

    SVG Large Annotated Circular Tree drawing

    Perl 2

  6. rRNA_pipeline rRNA_pipeline Public

    Forked from mccrowjp/rRNA_pipeline

    ssu-rRNA swarm OTU classification pipeline

    Python

Repositories

Showing 10 of 11 repositories
  • Data_Files Public

    Miscellaneous data uploaded from different projects

    allenlab/Data_Files’s past year of commit activity
    0 0 0 0 Updated Jul 13, 2021
  • allenlab/QIIME2_18Sv9_ASV_protocol’s past year of commit activity
    4 2 0 0 Updated Apr 1, 2021
  • allenlab/QIIME2_18Sv4_ASV_protocol’s past year of commit activity
    0 1 0 0 Updated Mar 31, 2021
  • allenlab/QIIME2_16S_ASV_protocol’s past year of commit activity
    14 4 3 0 Updated Mar 8, 2021
  • allenlab/i5_index_demultiplex’s past year of commit activity
    Python 0 0 0 0 Updated Nov 4, 2020
  • atomic_ORF_content Public Forked from bck243/atomic_ORF_content

    Counting the nitrogen and sulfur atoms in translated open reading frames for biogeochemical insights

    allenlab/atomic_ORF_content’s past year of commit activity
    Perl 0 MIT 1 0 0 Updated Dec 3, 2019
  • SNP_effects Public Forked from bck243/SNP_effects

    Determine the effect of SNPs on amino acid sequences (e.g. are whether mutations are synonymous)

    allenlab/SNP_effects’s past year of commit activity
    Perl 0 MIT 1 0 0 Updated Dec 2, 2019
  • rRNA_pipeline Public Forked from mccrowjp/rRNA_pipeline

    ssu-rRNA swarm OTU classification pipeline

    allenlab/rRNA_pipeline’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Apr 17, 2017
  • slacTree Public Forked from mccrowjp/slacTree

    SVG Large Annotated Circular Tree drawing

    allenlab/slacTree’s past year of commit activity
    Perl 0 3 0 0 Updated Oct 2, 2015
  • PhyloMetarep Public

    A branch of METAREP for comparative genomics based on PhyloDB annotation

    allenlab/PhyloMetarep’s past year of commit activity
    PHP 0 0 0 0 Updated Sep 2, 2015

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