-
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
C Other UpdatedNov 19, 2021 -
tsmc Public
triploid SMC inference method
-
-
-
mope Public
Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics
-
-
microplink Public
Fast and minimal PLINK file processing with numba
Python MIT License UpdatedOct 20, 2019 -
-
-
opl Public
Analysis scripts and notebooks accompanying a paper on mitochondrial heteroplasmy in humans
-
NCBI_taxonomy_tree Public
Forked from frallain/NCBI_taxonomy_treeNCBI taxonomy tree in-memory mapping
Python MIT License UpdatedNov 13, 2018 -
discoal Public
Forked from kr-colab/discoal(fork with minor changes to output) discoal is a coalescent simulation program capable of simulating model with recombination, selective sweeps, and demographic changes including population splits,…
-
pysam Public
Forked from pysam-developers/pysamPysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
C MIT License UpdatedJun 25, 2018 -
-
coalseam Public
Simulating coalescence through population pedigrees
-
jupyter-vim-binding Public
Forked from lambdalisue/jupyter-vim-bindingJupyter meets Vim. Vimmer will fall in love.
JavaScript UpdatedJun 14, 2016 -
infsites Public
A program to calculate exact sampling probabilities under the infinite sites mutation model in one or two demes
C Other UpdatedFeb 2, 2016 -
-
alnclst Public
Forked from matsengrp/alnclstA simple UCLUST-like clustering algorithm for pre-aligned sequences with built in recentering
Python UpdatedMay 22, 2014
{{ message }}