- Berkeley
- amyx.lu
- @amyxlu
- https://amyxlu.bsky.social
Highlights
- Pro
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plaid Public
All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
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cheap-proteins Public
Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http://bit.ly/cheap-proteins
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RFdiffusion Public
Forked from RosettaCommons/RFdiffusionCode for running RFdiffusion
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bairblog.github.io Public
Forked from bairblog/bairblog.github.ioJavaScript MIT License UpdatedApr 4, 2025 -
PEER_Benchmark Public
Forked from DeepGraphLearning/PEER_BenchmarkPEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
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progen-speculative-decoding Public
Forked from salesforce/progenOfficial release of the ProGen models
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 8, 2025 -
protpardelle Public
Forked from ProteinDesignLab/protpardelleDiffusion-based all-atom protein generative model.
Python MIT License UpdatedSep 22, 2024 -
AlphaFold3 Public
Forked from Ligo-Biosciences/AlphaFold3Open source implementation of AlphaFold3
Python Apache License 2.0 UpdatedSep 16, 2024 -
openfold Public
Forked from aqlaboratory/openfoldTrainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Python Apache License 2.0 UpdatedAug 10, 2024 -
transformers Public
Forked from huggingface/transformers🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
Python Apache License 2.0 UpdatedOct 24, 2023 -
ProteinMPNN Public
Forked from dauparas/ProteinMPNNCode for the ProteinMPNN paper
Jupyter Notebook MIT License UpdatedApr 5, 2023 -
Mono-repo for protein utilities.
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biopandas Public
Forked from BioPandas/biopandasWorking with molecular structures in pandas DataFrames
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 22, 2022 -
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design-baselines Public
Forked from brandontrabucco/design-baselinesBaselines for Model-Based Optimization
Python MIT License UpdatedOct 2, 2021 -
design-bench Public
Forked from brandontrabucco/design-benchBenchmarks for Model-Based Optimization
Python MIT License UpdatedSep 5, 2021 -
CPCProt Public
Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
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paired_cell_inpainting Public
Forked from alexxijielu/paired_cell_inpaintingSelf-supervised learning for microscopy images
Python GNU General Public License v2.0 UpdatedDec 6, 2018 -
chatsense Public
Forked from echenran/chatsenseAndroid messaging app that performs audial emotion analysis.
Python UpdatedDec 18, 2017 -