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transferase Public
The transferase system for retrieving methylome data from methbase
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transferase-test-data-small Public
Small data sets for integration tests for the transferase back-end commands
Shell MIT License UpdatedMay 10, 2025 -
asio Public
Asio C++ Library (copied to reorganize for use in transferase)
C++ Other UpdatedMar 24, 2025 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedNov 11, 2024 -
abismal Public
Forked from smithlabcode/abismalAbismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
C++ GNU General Public License v3.0 UpdatedNov 1, 2024 -
pysradb Public
Forked from saketkc/pysradbPackage for fetching metadata and downloading data from SRA/ENA/GEO
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 25, 2024 -
adapto-rs Public
Remove adaptors from short-read bisulfite sequencing data (coded in rust)
sequencer sequencing sequence-alignment sequencing-data sequencing-reads sequencing-data-analysis sequencing-adaptersRust MIT License UpdatedAug 21, 2024 -
dnmtools Public
Forked from smithlabcode/dnmtoolsTools for analyzing DNA methylation data
C++ GNU General Public License v3.0 UpdatedJul 20, 2024 -
qbio578a-examples Public
I'm using this repo to share some code I use for demonstrating algorithms
C GNU General Public License v3.0 UpdatedFeb 12, 2024 -
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libz-sys Public
Forked from rust-lang/libz-sysRust crate package to link to a system libz (zlib)
Rust Apache License 2.0 UpdatedJan 22, 2024 -
adssrc Public
A subset of the programs I use in my own data analysis.
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radmeth-demo-simulated-data Public
Simulated data that was used to generate part of the documentation for radmeth
GNU General Public License v3.0 UpdatedJul 26, 2023 -
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mlevels Public
Implementation of the levels command from dnmtools in rust
Rust MIT License UpdatedMay 7, 2023 -
msym Public
Make sites symmetric CpGs in counts format DNA methylation levels
Rust MIT License UpdatedMay 4, 2023 -
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falco Public
Forked from smithlabcode/falcoA C++ drop-in replacement of FastQC to assess the quality of sequence read data
HTML GNU General Public License v3.0 UpdatedSep 16, 2022 -
preseqR Public
Forked from smithlabcode/preseqRAn R package for estimating library complexity
R UpdatedSep 5, 2022
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