Process Conservation
Process conservation with profile
python conservation.py conservation.bw BAND.bed OUTPUT.csv
Process BED
Process bedfile intersection with profile
python intersect.py SORTED_FILE_STAIN SORTED_FILE_REGIONS BINS OUTPUT_CSV
Visualize Visualize single file
python visualize.py plot foo.png file.csv
Visualize logfc
python visualize.py logfc foo.png file1.csv file2.csv
Visualize heatmap
python visualize.py heatmap foo.png file1.csv file2.csv file3.csv ...
Prepare data and launch NN.
python prepare_ml.py
python nn.py