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spring2024-lectures Public
Forked from stanford-cs336/spring2024-lecturesPython UpdatedDec 26, 2024 -
llm.c Public
Forked from karpathy/llm.cLLM training in simple, raw C/CUDA
Cuda MIT License UpdatedOct 2, 2024 -
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microbiome-metabolome-curated-data Public
Forked from borenstein-lab/microbiome-metabolome-curated-dataAK fork of Muller, E., Algavi, Y.M. & Borenstein, E. The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis. npj Biofilms Microbiomes 8, 79 (2022). https…
HTML UpdatedFeb 8, 2023 -
DCell Public
Forked from idekerlab/DCellDCell browser and gene deletion simulator
JavaScript MIT License UpdatedDec 14, 2022 -
hiview Public
Forked from idekerlab/hiviewHiView of DNA Damage Response Assemblies Map (DDRAM)
JavaScript MIT License UpdatedDec 6, 2022 -
A game theoretic approach to explain the output of any machine learning model.
Jupyter Notebook MIT License UpdatedMay 17, 2022 -
ddot Public
Forked from idekerlab/ddotToolkit for constructing, analyzing, and visualizing data-driven ontologies
Python MIT License UpdatedMar 10, 2022 -
HiSig Public
Forked from fanzheng10/HiSigEnrichment analysis for nested and overlapping gene sets
R UpdatedJan 17, 2022 -
CliXO-1.0 Public
Forked from fanzheng10/CliXO-1.0CliXO algorithm re-implemented
C++ MIT License UpdatedNov 9, 2021 -
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alignOntology Public
Forked from mhk7/alignOntologyCode for aligning two ontologies. Originally used in "A gene ontology inferred from molecular networks" doi:10.1038/nbt.2463
C++ BSD 2-Clause "Simplified" License UpdatedJan 27, 2021 -
DrugCell Public
Forked from idekerlab/DrugCellA visible neural network model for drug response prediction
Python MIT License UpdatedJan 11, 2021 -
dbl-visualization Public
Forked from bartwesselink/dbl-visualizationTypeScript GNU General Public License v3.0 UpdatedSep 2, 2018 -
dotfiles Public
various configuration files including .gitconfig, .vimrc and .screenrc
Shell UpdatedApr 17, 2018 -
kanjinetworks Public
Forked from acoomans/kanjinetworkskanjinetworks is an interface for the Kanji Networks database.
Python MIT License UpdatedAug 19, 2017 -
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genome-research-edgeR-DESeq2 Public
Generate edgeR- and DESeq2-flavored input files for DEIVA
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