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pyGenomeTracks Public
Forked from deeptools/pyGenomeTrackspython module to plot beautiful and highly customizable genome browser tracks
Python GNU General Public License v3.0 UpdatedMar 5, 2024 -
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hladownload Public
Forked from ramonamerong/hladownloadA tool for downloading HLA alleles, epitopes and frequencies
Python MIT License UpdatedMay 19, 2023 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
1 UpdatedApr 28, 2023 -
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viralrecon Public
Forked from nf-core/viralreconAssembly and intrahost/low-frequency variant calling for viral samples
Nextflow MIT License UpdatedFeb 23, 2022 -
fetchngs Public
Forked from nf-core/fetchngsPipeline to fetch metadata and raw FastQ files from public and private databases
Nextflow MIT License UpdatedFeb 12, 2022 -
ariba Public
Forked from sanger-pathogens/aribaAntimicrobial Resistance Identification By Assembly
Python Other UpdatedJan 31, 2022 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedJan 15, 2022 -
reproducible-research Public
Forked from mahesh-panchal/reproducible-researchA demonstration of how to work reproducibly using version control, containers, and a workflow manager.
HTML GNU General Public License v3.0 UpdatedJan 14, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJan 7, 2022 -
datafunk Public
Forked from snake-flu/datafunkMiscellaneous data manipulation tools
Python UpdatedDec 15, 2021 -
configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedSep 25, 2021 -
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nf-core-bactmap Public
Forked from nf-core/bactmapA mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
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tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedApr 24, 2021 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedApr 14, 2021 -
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pangolin Public
Forked from cov-lineages/pangolinResources for a lineage naming scheme for SARS-CoV-2/hCoV-2019
Python GNU General Public License v3.0 UpdatedFeb 5, 2021 -
hAMRonization Public
Forked from pha4ge/hAMRonizationParse multiple Antimicrobial Resistance Analysis Reports into a common data structure
Python UpdatedDec 11, 2020 -
MLSTar Public
Forked from iferres/MLSTarAn easy way of MLSTyping your genomes in R.
R MIT License UpdatedNov 25, 2020 -
AMR Public
Forked from msberends/AMRA free, open-source and independent R package to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using ev…
R Other UpdatedJul 28, 2020 -
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remove_blocks_from_aln Public
Forked from sanger-pathogens/remove_blocks_from_alnPython Other UpdatedMar 3, 2020
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