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DESeq.analysis.R
DESeq.analysis.R
 
 
DEXSeq.analysis.R
DEXSeq.analysis.R
 
 
GO_enrichment.R
GO_enrichment.R
 
 
KEGG_enrichment.R
KEGG_enrichment.R
 
 
PFAM_enrichment.R
PFAM_enrichment.R
 
 
README.md
README.md
 
 
Rtsne.R
Rtsne.R
 
 
SOM.R
SOM.R
 
 
VennDiagram.R
VennDiagram.R
 
 
add_quantile.R
add_quantile.R
 
 
anova.R
anova.R
 
 
barplot.GO.R
barplot.GO.R
 
 
boxplot_expressed_isoforms.R
boxplot_expressed_isoforms.R
 
 
cutree.R
cutree.R
 
 
differential_coSI.R
differential_coSI.R
 
 
dimensRed.R
dimensRed.R
 
 
edgeR.analysis.R
edgeR.analysis.R
 
 
element.detected.R
element.detected.R
 
 
flux.profile.R
flux.profile.R
 
 
gene.list.enrichment.R
gene.list.enrichment.R
 
 
gene.pair.correlation.R
gene.pair.correlation.R
 
 
ggSOM.R
ggSOM.R
 
 
ggboxplot.R
ggboxplot.R
 
 
ggdendro.R
ggdendro.R
 
 
ggheatmap.R
ggheatmap.R
 
 
gghist.R
gghist.R
 
 
gglines.R
gglines.R
 
 
ggpie.R
ggpie.R
 
 
ggpoints.R
ggpoints.R
 
 
k-means.R
k-means.R
 
 
major.isoform.across.samples.R
major.isoform.across.samples.R
 
 
mann-whitney.R
mann-whitney.R
 
 
matrix_funct.R
matrix_funct.R
 
 
matrix_matrix_correlation.R
matrix_matrix_correlation.R
 
 
matrix_matrix_operation.R
matrix_matrix_operation.R
 
 
matrix_to_dist.R
matrix_to_dist.R
 
 
matrix_wilcox.R
matrix_wilcox.R
 
 
maxdiff.R
maxdiff.R
 
 
missing.values.R
missing.values.R
 
 
modularity.R
modularity.R
 
 
normalization.DESeq.R
normalization.DESeq.R
 
 
normalize.matrix.R
normalize.matrix.R
 
 
nt.coverage.R
nt.coverage.R
 
 
plot.bigWig.profile.R
plot.bigWig.profile.R
 
 
plot.differential.isoforms.R
plot.differential.isoforms.R
 
 
plot.isoform.levels.R
plot.isoform.levels.R
 
 
plot.mean.sd.R
plot.mean.sd.R
 
 
plot.network.R
plot.network.R
 
 
plot_pca.R
plot_pca.R
 
 
projection.score.R
projection.score.R
 
 
quantile_normalization.R
quantile_normalization.R
 
 
read.genomic.coverage.R
read.genomic.coverage.R
 
 
removeBatchEffect.R
removeBatchEffect.R
 
 
rpkm_distribution.R
rpkm_distribution.R
 
 
rpkm_fraction.R
rpkm_fraction.R
 
 
scale_matrix.R
scale_matrix.R
 
 
scatterplot.R
scatterplot.R
 
 
sort.rpkm.lines.R
sort.rpkm.lines.R
 
 
vlsvt.R
vlsvt.R
 
 
wordcloud.R
wordcloud.R
 
 

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Rscripts

Several R scripts for exploratory data analysis

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