Tool for mapping text to EDAM. It is designed to assist not replace a curator.
###Usage
Text input may be
- key words
- short phrases (typically in a text file, one word or phrase / line)
- free text such as paper abstracts, full texts and tutorials
Mapping to EDAM concepts (including deprecated concepts), specifically
- preferred labels
- exact synonyms
- narror and broad synonyms
- concept definition (maybe)
- concept comments (maybe)
Output includes (provisionally) at least the following information:
- text input : supplier-provided keyword, short phrase or text
- label_or_synonym : EDAM label or synonym that keyword / phrase was matched to
- URI : EDAM URI of the matched class
- obsolete : one of "yes" or "no"
- match_type : one of "Label", Exact_synonym", "Narrow_synonym" or "Broad_synonym"
- match_conf : one of "Exact" (for non-case-sensitive exact text matches) or "Inexact" (otherwise)
- branch: : one of "Topic", "Operation", "Data" or "Format"