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Secure and fast microVMs for serverless computing.

Rust 27,797 1,921 Updated May 6, 2025

Papers from the computer science community to read and discuss.

Shell 92,917 5,937 Updated May 4, 2025

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Nextflow 19 5 Updated Apr 30, 2025

The official sources for the RDKit library

HTML 2,893 914 Updated May 5, 2025

Collection of essential Leptos utilities inspired by React-Use / VueUse

Rust 398 93 Updated Apr 16, 2025

An nf-test plugin for reading the contents of SAM/BAM/CRAM files in assertions

Java 7 2 Updated Apr 7, 2025

Super-fast and accurate demultiplexing of direct RNA-seq runs.

Jupyter Notebook 13 1 Updated Feb 23, 2025

Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.

R 34 1 Updated Jun 3, 2022

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Rust 1,687 209 Updated Apr 7, 2025

A set of command line utilities based on Rust-Bio.

Rust 192 22 Updated Jun 24, 2024

A simple, fast and user-friendly alternative to 'find'

Rust 37,807 873 Updated May 1, 2025

EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.

Python 57 13 Updated Dec 12, 2024

Simple bacterial assembly and annotation pipeline

Nextflow 73 56 Updated Apr 30, 2025

Rust bindings for the Python interpreter

Rust 13,562 827 Updated May 5, 2025

30 Days Lost in Space Arduino STEM Kit writeup

C++ 1 Updated Mar 4, 2024

A Virtual Machine Monitor for modern Cloud workloads. Features include CPU, memory and device hotplug, support for running Windows and Linux guests, device offload with vhost-user and a minimal com…

Rust 4,449 478 Updated May 5, 2025

Create book from markdown files. Like Gitbook but implemented in Rust

Rust 19,575 1,721 Updated May 5, 2025

annotate a VCF with other VCFs/BEDs/tabixed files

Go 375 56 Updated Nov 23, 2023

egui: an easy-to-use immediate mode GUI in Rust that runs on both web and native

Rust 24,671 1,730 Updated May 6, 2025

Minimalist ML framework for Rust

Rust 17,139 1,094 Updated May 6, 2025

nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.

Nextflow 5 10 Updated Apr 30, 2025

A fast CLI tool built in Rust that analyzes log files, extracts patterns, and generates insights.

Rust 6 2 Updated Apr 21, 2025

native OCR for MacOS, Windows, Linux

Rust 164 7 Updated Apr 14, 2025

⚡ TabPFN: Foundation Model for Tabular Data ⚡

Python 3,523 305 Updated May 5, 2025

LLM-based ontological extraction tools, including SPIRES

Jupyter Notebook 677 92 Updated May 2, 2025

The Isoforms from Single-Cell; Long-read Expression Suite

R 27 1 Updated Jan 14, 2025

🪴 A minimalistic and customizable startpage featuring the Catppuccin palettes. Designed for both aesthetics and functionality with seamless hosting on GitHub Pages

JavaScript 181 209 Updated May 6, 2025

Stochastic Testing and Input Manipulation for Unbiased Learning Systems

Nextflow 29 14 Updated Apr 30, 2025

Terror Game about ghosts

Rust 74 6 Updated May 6, 2025
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