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Oregon Health & Science University
- Portland, OR
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14:30
(UTC -07:00) - http://benjaminbarad.com
- @benjaminbarad
- https://bsky.app/profile/tomo.science
Highlights
- Pro
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wisemanlab.github.io Public
Forked from WisemanLab/wisemanlab.github.ioFraser Lab website
HTML MIT License UpdatedJun 27, 2025 -
teamtomo.github.io-1 Public
Forked from teamtomo/teamtomo.github.ioteamtomo.org website
CSS UpdatedAug 7, 2024 -
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ETSegTools Public
Operations on Quantized or Binary CryoET Segmentations
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lamella_mapper Public
Map tomograms back to their lamella position
BSD 3-Clause "New" or "Revised" License UpdatedSep 20, 2023 -
membrain-seg Public
Forked from teamtomo/membrain-segmembrane segmentation in 3D for cryo-ET
Python Other UpdatedApr 20, 2023 -
pycurv Public
Forked from kalemaria/pycurvReliable estimation of membrane curvature for cryo-electron tomography
Python GNU Lesser General Public License v3.0 UpdatedMar 8, 2023 -
TFS_Autoscript_Tools Public
Scripts written to interface with TFS dual beam instruments via the autoscript interface
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 27, 2023 -
Live2D Public
Live On The Fly 2D Classification with cisTEM and Warp
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HDN Public
Forked from juglab/HDNThis repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets
Python Other UpdatedApr 27, 2022 -
Pyto Public
Forked from vladanl/PytoImage processing of biological cryo-electron tomograms
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paintera Public
Forked from saalfeldlab/painteraJava GNU General Public License v2.0 UpdatedApr 12, 2022 -
DenoiSeg Public
Forked from juglab/DenoiSegJoint training of denoising and segmentation.
Jupyter Notebook Other UpdatedApr 11, 2022 -
diffusion-net Public
Forked from nmwsharp/diffusion-netPytorch implementation of DiffusionNet for fast and robust learning on 3D surfaces like meshes or point clouds.
Python MIT License UpdatedApr 11, 2022 -
restore Public
Forked from eugenepalovcak/restoreA CNN for denoising cryo-EM images
Python GNU General Public License v3.0 UpdatedApr 11, 2022 -
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matplotlibrc Public
Settings file for matplotlib to maximize figure niceness.
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have_your_cake Public
Using neural networks to reduce the tradeoffs in tomographic data collections
Python Other UpdatedNov 9, 2021 -
defects_DLMBL Public
Team Defects project for DL@MBL project
Jupyter Notebook MIT License UpdatedOct 5, 2021 -
nyt_science_speller Public
Spelling Bee twitter bot for words used often by scientists.
BSD 3-Clause "New" or "Revised" License UpdatedJun 29, 2021 -
photos-of-me Public
Forked from eidorb/photos-of-meDownload your tagged photos from Facebook
Python MIT License UpdatedJun 16, 2021 -
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teamtomo.github.io Public
Forked from teamtomo/teamtomo-site-archiveA collaborative knowledge sharing platform for the cryo-ET community
MATLAB BSD 3-Clause "New" or "Revised" License UpdatedJan 28, 2021 -
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mthompson-lab.github.io Public
Forked from mthompson-lab/mthompson-lab.github.ioThompson Lab Website
CSS UpdatedMay 11, 2020 -
pymol_syntax Public
Syntax rules for .pml files in sublime text.
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relion Public
Forked from 3dem/relionImage-processing software for cryo-electron microscopy
C++ GNU General Public License v2.0 UpdatedAug 30, 2019 -
cistem_dev_env Public
Forked from arohou/cistem_dev_envA Docker container for cisTEM development
Dockerfile UpdatedAug 2, 2019