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Releases: biocore/unifrac

Add unweighted_unnormalized method and dense pair interface

12 May 22:29
@sfiligoi sfiligoi
1.5
38e377e
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Add unweighted_unnormalized method and dense pair interface Latest
Latest

What's Changed

  • Add support for unweighted_unnormalized by @sfiligoi in #164
  • Add support for the dense pair interface by @sfiligoi in #166
  • It now properly builds on ARM-based MacOS

Full Changelog: 1.3.2...1.5

Contributors

sfiligoi
Assets 2
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Minor, release automation

18 Apr 18:04
@wasade wasade
1.3.2
a88df55
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Minor, release automation

What's Changed

Full Changelog: 1.3.1...1.3.2

Contributors

wasade
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Maintenance

18 Apr 17:51
@wasade wasade
1.3.1
5c5cbd8
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Maintenance

What's Changed

  • Switch h5unifrac_all to lazy load semantics by @sfiligoi in #155
  • Remove extraneous str casts by @wasade in #159
  • Update arguments name used in beta_diversity in tests by @eamanu in #160
  • unifrac.faith_pd now accepts in memory objects by @wasade in #162
  • CSC representation bug fixed by @wasade in #162, see also #161
  • Additional table validations by @wasade in #162, see also #34
  • Test on OSX Intel (macos-13) and OSX Arm64 (macos-14) in GitHub Actions, deprecate Python 3.8, add Python 3.12, switch from nose to pytest, by @wasade in #162

New Contributors

Full Changelog: 1.3...1.3.1

Contributors

wasade, sfiligoi, and eamanu
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Add support for subsampling, PERMANOVA and multi-unifrac

28 Apr 22:21
@sfiligoi sfiligoi
1.3
6a9cca8
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Add support for subsampling, PERMANOVA and multi-unifrac

What's Changed

Full Changelog: 1.2...1.3

Contributors

sfiligoi
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Change default precision and deprecate the threads argument

14 Dec 16:37
@sfiligoi sfiligoi
1.2
0e61d5a
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Change default precision and deprecate the threads argument

What's Changed

  • Deprecate threads and add n_substeps by @sfiligoi in #146
  • Switch from condensed to matrix API calls by @sfiligoi in #147
  • Change default precision to fp32 and add explicit fp64 functions by @sfiligoi in #148

Full Changelog: 1.1.1...1.2

Contributors

sfiligoi
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Bug fix for compatibility with biom-format 2.1.12

13 Apr 18:16
@wasade wasade
1.1.1
20684b0
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Bug fix for compatibility with biom-format 2.1.12

What's Changed

Full Changelog: 1.1.0...1.1.1

Contributors

wasade
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Provide in-memory support against unifrac-binaries

30 Mar 16:54
@wasade wasade
1.1.0
fc32d22
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Provide in-memory support against unifrac-binaries

What's Changed

  • Support for passing biom and the tree in memory by @wasade in #142

Full Changelog: 1.0.0...1.1.0

Contributors

wasade
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Release associated with manuscript describing OpenACC improvements

17 Feb 19:17
@wasade wasade
0.20.1.1
d065698
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Release associated with manuscript describing OpenACC improvements

This is a historical release documenting the code used for benchmarking the OpenACC release. We advise using the latest version of this software. Details for install, including a functional example, can be found here.

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Python-only repo, depends on unifrac-binaries

07 Jan 19:53
@sfiligoi sfiligoi
1.0.0
077fca4
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Python-only repo, depends on unifrac-binaries

Since the python binding and the backend implementation evolve independently, the sucpp code was moved into an independent repo (unifrac-binaries).
This repo now only contains the python bindings.

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Bug fix for massive PCoA and simplified build

19 Oct 21:20
@wasade wasade
0.20.3
3f4f412
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Bug fix for massive PCoA and simplified build

As the title says, thanks @sfiligoi!!

Contributors

sfiligoi
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