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MiC is an ImageJ plugin to compare segmentation masks

Java 19 4 Updated Jun 4, 2025

Modular, object-based analysis for ImageJ/Fiji

Java 14 2 Updated Jun 26, 2025

An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.

Java 71 9 Updated Jul 7, 2025

Quality control for bioimage analysis

Python 1 Updated Oct 19, 2024

Loading and handling microscopy data in blender

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Public domain software for processing and analyzing scientific images

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Toolbox for molecular animations in Blender, powered by Geometry Nodes.

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Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.

Python 9 1 Updated May 13, 2022

Resources for teaching/preparing to teach bioimage analysis

JavaScript 58 25 Updated Jul 4, 2025

Incorporating Machine learning tools into Image Analysis workflows using Fiji, Ilastik and StarDist

ImageJ Macro 2 Updated May 22, 2024

The known BioVoxxel Toolbox functions now improved for 2D and 3D images

Java 17 1 Updated Jul 8, 2025

Favorite imaging analysis tools of NEUBIAS members - editor Kota Miura

Jupyter Notebook 4 Updated May 25, 2023

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Python 1,761 495 Updated Jul 1, 2025
Java 5 6 Updated Jul 17, 2022
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