Stars
Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
hodgkin_lymphoma_analysis
Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
A tool for detecting somatic variants in single cell data
Haplotype-aware CNV analysis from single-cell RNA-seq
new layout algorithms for network visualizations in R
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Independent Component Analysis decipher functional modules for better cell clustering and annotation
An R/Bioconductor package to identify higher-order molecular phenotypes
📊 Identify cell types and pathways affected by genetic risk loci.
StarDist - Object Detection with Star-convex Shapes
Latex code for making neural networks diagrams
Repository for scRNAseq study of human kidneys
Repo for scripts for Ludwig et al mtDNA genotyping
Latent tree models for phylogenetic inference of single-cell data
Bioinformatics one liners from Ming Tang
An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
Multi-study integration of cellular trajectories
Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
Implementation of the Leiden algorithm to be used with igraph called by reticulate in R.
An implementation of MNN (Mutual Nearest Neighbors) correct in python.