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Core set of scripts to perform common downstream analysis functionalities for Plasmodium. Includes wrappers of tools and bespoke code to perform common tasks.

2 Updated Jun 26, 2025

A finite mixture geographic profiling model for count, prevalence and point pattern data

R 2 Updated May 26, 2021

Structured Wright Fisher Model for Malaria Population Genetic Simulations

C++ 1 Updated Sep 19, 2024

Spatial-temporal aggregate variant encoding

R 2 1 Updated Apr 17, 2025
C++ 3 2 Updated Feb 7, 2025

Sample size calculation and power analysis for drug- and diagnostic resistance studies

R 2 Updated Nov 8, 2024

Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates

C++ 1 Updated Jun 30, 2025

Flexible Markov chain monte carlo via reparameterization

R 12 6 Updated Jul 18, 2024

Simulating Plasmodium Epidemiological and Genetic Data

R 12 Updated Apr 3, 2023

Filtering and analysis of MIP data

R 2 1 Updated Dec 12, 2023
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