Releases: bonilab/Uganda-phase-1
Releases · bonilab/Uganda-phase-1
Raw output of main analysis
Uganda Malaria Simulation Results
This release contains the primary output data generated from the malaria simulation study focused on Uganda, as described in the main repository README and the associated publication.
These simulations were conducted using the Temple-Malaria-Simulation framework (see Source/ directory in the main repository branch for the mirrored code version used) and the configuration files found within the Results/ directory of the main repository branch.
Contents:
This release includes the following primary artifacts:
- Raw Simulation Output: Large data files (e.g., SQLite databases
*.sqlite) containing the detailed, individual-level simulation results for the main analysis scenarios exploring malaria dynamics and intervention strategies in Uganda. These may be split into multiple parts (e.g.,Uganda_Results.tar.gz.part-aa,Uganda_Results.tar.gz.part-ab, etc.) due to file size limits. - Summary Data: Any aggregated or summarized data files derived from the raw output.
- Analysis Scripts: Scripts used to process or analyze the raw output data, if not already included in the main repository.
How to Use:
- Download all parts of the desired archive file (e.g.,
Uganda_Results.tar.gz.part-aa,Uganda_Results.tar.gz.part-ab, etc.) from this release page to the same directory. - If the download consists of multiple
.part-*files, combine them into a single archive file using thecatcommand in your terminal (replaceUganda_Results.tar.gzwith the actual target filename if different):cat Uganda_Results.tar.gz.part-* > Uganda_Results.tar.gz
- Unpack the resulting archive (
.tar.gz):tar -xzf Uganda_Results.tar.gz
- The data (e.g., SQLite files) can now be queried and analyzed using appropriate tools (e.g., DB Browser for SQLite, Python with
sqlite3, R withRSQLite). - Refer to the configuration files in the main repository (
Results/directory) to understand the parameters used for each simulation scenario corresponding to these output files.
Notes:
- These data files can be very large. Ensure you have sufficient disk space.
- Ensure you are using the correct version of the simulation framework and configuration files corresponding to these results for reproducibility, as detailed in the main repository.