8000 Release v0.3.2: [reprsimil] Mostly bug fixing for brsa (#144) · brainiak/brainiak · GitHub
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v0.3.2

@lcnature lcnature tagged this 31 Oct 18:36
* a
 Changes to be committed:
	new file: brainiak/brsa/test.txt

* 	deleted:    brsa/test.txt

* changed some of the logging levels

* Creating new functions to prepare to a new version which explicitly deals with shared time series not explained by design matrix

* Further changing singpara, preparing to deal with shared time series X0

* Changed the model to consider spatial correlation in noise

* Updated the BRSA model to incorporate spatial correlation in noise
Fixed some bugs in utils.ReadDesign
Renamed epsilon to eta in consistence with the paper
Expanded the example a bit
Other minor changes

* fixed some bugs and typos

* Removed some redundant calculation"

* changed some of the logging levels

* Creating new functions to prepare to a new version which explicitly deals with shared time series not explained by design matrix

* Further changing singpara, preparing to deal with shared time series X0

* Changed the model to consider spatial correlation in noise

* attempt to solve conflict

 Changes to be committed:
	modified:   brainiak/reprsimil/brsa.py
	modified:   brainiak/utils/utils.py
	modified:   examples/reprsimil/brsa_representational_similarity_estimate_example.ipynb
	modified:   tests/reprsimil/test_brsa.py
	modified:   tests/utils/test_utils.py

* fixed some bugs and typos

* Removed some redundant calculation"

* Removing some unnecessary package in brsa example

* adding comment on nuisance regressor

* removing outdated note in brsa

* updating docstring

* a bit more changing of docstring

* minor changes

* update the example for brsa

* updating example to do z-scoring

* cleaning up

* cleaning up

* fix a bug in utils.ReadDesign

* bug fixing for BRSA._prepare_data_XYX0

* trivial

* changes re PR review
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