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MCP server for Generating Galaxy Tools
TaGra: TAbular data preprocessing to GRAph representation.
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
upload big files to Zenodo using cURL, jq and bash
List of computational resources for analyzing microbial sequencing data.
Genome modeling and design across all domains of life
Finetune Qwen3, Llama 4, TTS, DeepSeek-R1 & Gemma 3 LLMs 2x faster with 70% less memory! 🦥
An open source deep research clone. AI Agent that reasons large amounts of web data extracted with Firecrawl
Autonomous coding agent right in your IDE, capable of creating/editing files, executing commands, using the browser, and more with your permission every step of the way.
Easily fine-tune, evaluate and deploy Qwen3, DeepSeek-R1, Llama 4 or any open source LLM / VLM!
A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.
Use your android device to boot Linux distributions/ISO files on your PC
A Slurm cluster using docker-compose
This repo collects the list of learning online resources related to microbiome computational science and tools.
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
All Algorithms implemented in Python
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
A network filesystem client to connect to SSH servers
Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.
Introductions to key concepts in quantum programming, as well as tutorials and implementations from cutting-edge quantum computing research.
Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 3, Mistral Small 3.1 and other large language models.