8000 chagas98 (Samuel Chagas de Assis) / Starred · GitHub
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Rust bioinformatics crate aimed at Microbial genomics

Rust 13 6 Updated Jun 24, 2025
Python 3 1 Updated Mar 18, 2025

Some CUDA example code with READMEs.

Cuda 168 26 Updated Mar 2, 2025

Repository lists useful papers related to representation learning with links to research papers, conference names and year of publish.

25 5 Updated Apr 23, 2023

The SciML Scientific Machine Learning Software Organization Website

CSS 59 53 Updated Jun 23, 2025

Dataset and package for working with protein-protein interactions in 3D

Jupyter Notebook 93 9 Updated Apr 28, 2025

A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.

Python 172 30 Updated Apr 18, 2025

During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this i…

Vue 33 13 Updated Jun 19, 2025

A repository of update in molecular dynamics field by recent progress in machine learning and deep learning.

321 55 Updated Feb 28, 2021
Python 129 9 Updated Aug 29, 2024

Per-position conservation index of multiple sequence alignment

Python 5 Updated Sep 22, 2021

Toolkit for free-energy calculation setup/analysis and biomolecular structure handling

Python 150 52 Updated May 20, 2025

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

R 551 49 Updated May 11, 2025

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.

Python 14 2 Updated Dec 27, 2024

An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

263 25 Updated Apr 16, 2024

PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure.

Python 301 66 Updated Feb 19, 2024

Desktop tool for microbial genome annotation and gene detection

Jupyter Notebook 12 4 Updated Jun 22, 2021

Personal data visualization side projects.

R 354 45 Updated Feb 3, 2024
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