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GFF.parse modifies input order of base_dict

#144

· percyfal opened

on Mar 28, 2024

Warning in GFFParser: BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use Seq(None, length) instead.

#143

· victorlin opened

on Jan 29, 2024

Error in GFFParser: AttributeError: module 'Bio.SeqFeature' has no attribute 'SimpleLocation'

#142

· victorlin opened

on Jan 29, 2024

Error in GFFParser: UnknownSeq is deprecated in biopython 1.81

#136

· Kmassau opened

on Feb 13, 2023

glimmergff_to_proteins.py / Alternative Codon Table

#132

· zeyak opened

on Sep 18, 2020

glimmergff_to_proteins.py / Reordering Fasta file

#131

· zeyak opened

on Sep 18, 2020

IndexError with NCBI gff

#128

· MrTomRod opened

on Dec 5, 2019

Did not find remapped ID location:

#118

· fbeghini opened

on Jul 10, 2018

ValueError: need more than 0 values to unpack

#115

· zhengboying opened

on Mar 15, 2018

Regarding gff2_to_gff3.py script

#111

· jeffinrockey opened

on Sep 21, 2016

GFF3 parent / id remapping issue.

#109

· hexylena opened

on May 26, 2016

Missing features in GFF3 data

#108

· thobalose opened

on Feb 9, 2016

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