Stars
Fast and memory-efficient exact attention
Machine learning methods for DNA sequence analysis.
Pipeline to calculate icSHAPE score in genome with sliding window strategy
Extract 3D contacts (.pairs) from sequencing alignments
Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer, NeurIPS2024
This package contains deep learning models and related scripts for RoseTTAFold
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Official repo for inverse flow and consistency models.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
A modular, primitive-first, python-first PyTorch library for Reinforcement Learning.
This repository hosts a minimal version of a Python API for BPNet.
Collection of scripts to aid the analysis of Smart-seq+5'. Scripts cannot be used out-of-the-box, but are supposed to aid the understanding of methods used.
https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
MaSIF-neosurf: surface-based protein design for ternary complexes.
Scripts to process and analyze snoKARR-seq data
Message Passing Neural Networks for Molecule Property Prediction
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
Unofficial implementation of Titans, SOTA memory for transformers, in Pytorch
Official repository for our work on micro-budget training of large-scale diffusion models.
code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503