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scanpy-tutorials Public
Forked from scverse/scanpy-tutorialsScanpy Tutorials.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJun 2, 2025 -
spatialdata-notebooks Public
Forked from scverse/spatialdata-notebooksJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJun 2, 2025 -
squidpy_notebooks Public
Forked from scverse/squidpy_notebooksTutorials for Squidpy
Jupyter Notebook MIT License UpdatedJun 2, 2025 -
xeniumslicer_windsurf_gpt41 Public
Pipeline for patch extraction and DAPI analysis. Loads DAPI from Zarr if present, otherwise from OME-TIFF. No conversion or memory mapping logic.
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XeniumSlicer: AI Pipeline for Xenium Data Processing. Prefers OME-Zarr for image loading, falls back to OME-TIFF, no conversion logic.
HTML UpdatedApr 25, 2025 -
Xenium Slicer: Efficient DAPI-based cell segmentation and classification pipeline supporting OME-TIFF and OME-ZARR.
HTML UpdatedApr 25, 2025 -
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OAD Public
Forked from chrissem/OADCollection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Jupyter Notebook GNU General Public License v3.0 UpdatedFeb 5, 2025 -
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rustlings Public
Forked from rust-lang/rustlings🦀 Small exercises to get you used to reading and writing Rust code!
Rust MIT License UpdatedMar 5, 2024 -
cellpose Public
Forked from chrissem/cellposea generalist algorithm for cellular segmentation with human-in-the-loop capabilities
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prezto-contrib Public
Forked from belak/prezto-contribA set of additional plugins designed to work easily with prezto
Shell MIT License UpdatedOct 30, 2022
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