Releases: churchill-lab/g2gtools
Releases · churchill-lab/g2gtools
3.1.0
Added --gtf flag to vcf2vci command. This will generate a stats file showing where snps and indels are located.
Full Changelog: 3.0.0...3.1.0
v3.0.0
- Revamped all the commands and logging to be more consistent and user-friendly.
- Updated third party libraries.
- Tested on Python 3.10+.
Full Changelog: 2.4.0...3.0.0
v2.4.0
Fixed a bug in parsing GTF file where the attribute field's values contained nested semi-colons.
Full Changelog: 2.3.0...2.4.0
v2.3.0
Fixed bug in parsing a region.
Full Changelog: 2.2.0...2.3.0
v2.2.0
Minor changes and bug fixes
Full Changelog: 2.0.1...2.2.0
v2.0.1
Fixes for updates from py2 to py3 and due to the increment in pysam version to 0.20.0.
- pysam changed the API term: cigar to cigartuples. Calls were updated to account for this change.
- Mapping of contig names to header positions was off, and required correction.
- g2g.get_logger was used in several places when g2g_utils.get_logger was intended.
v2.0.0
Latest version used in Workflows
1.0.1 New setup and versioning
Same functionality as 1.0.0
1.0.0 Move to Python 3.x
This release is geared toward migrating the existing codebase to Python 3.
v0.1.31
Stable version