Stars
A template for creating modular shiny applications that meet academic standards and are reproducible
an interactive, reproducible, expandible, instructional, and open-source GUI-based app for ecological niche modeling
Scripts for analyzing Illumina-generated environmental DNA sequence data.
Bioinformatic pipeline for processing amplicon data using Dada2.
This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.
Amplicon sequencing analysis workflow using DADA2 and QIIME2
This is a software utility for calculating pooling volumes and graphing quality control data of next generation sequencing (NGS) libraries.
MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic assignments.
The Metaprobe: a nimble, low-cost environmental DNA sampler for upscaling marine communities monitoring
Links for the California Molecular Methods Workgroup SOPs and feedback
Public data and scripts for 2019 hake survey analyses
Aplicación Shiny para el cálculo de posiciones tróficas basado en librería tRophicPosition
Debugging Tools to Inspect the Intermediate Steps of a Call
Surface velocity, object tracking, and river flow measurements in an open-source API
Assign taxonomy with blast, can be used for qiime
Historial de las normas aprobadas por la Convención Constitucional de Chile en 2022
Scripts and data to plot river basins in the United States
Conjunto de funciones para calcular índices y estadísticos climáticos hidrológicos a partir de datos tidy. Incluye una función para graficar resultados georeferenciados y e información cartográfica.
ejercicios de aplicación para temas de ecología y manejo de poblaciones
MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
Pipe-friendly Framework for Basic Statistical Tests in R
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
CLI tool for flexible and fast adaptive sampling on ONT sequencers