-
Notifications
You must be signed in to change notification settings - Fork 1
coongroup/Y3K-Software
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
README **Metabolomic Quantitation** Included here are tools for performing metabolomic quantitation using Thermo Fisher Q-Exactive GC Data files. Both C# solution files, as well as compiled executables for these software tools (Y3K-Deconvolution Engine, Y3K-Deconvolution Studio, and Y3K GC Quant) are provided. Additionally, a guide for using these tools is provided 'Y3K GC Quantitation Pipeline User Guide.pdf'. **Y3K Data Analyses** We have provided a single project solution (Y3K_Data_Analyses) which contains code for classification of RDR-associated molecules, genotype-phenotype outlier analysis, molecule covariance network analysis, and KO-KO correlation analysis. This software tools reads in data from tab-delimited text files which are provide here in the 'Associated Data Files' directory. Note: The data within these text files was taken directly from Supplementary Table 3. To enable proper execution, a single molecule name was changed in the fermentation data files as two entries were labeled 'Glyercic acid' without any notes on the number of associated TMS tags. If you encounter any issues with these software tools please contact us at y3kcontact@gmail.com. Any necessary updates will be pushed to a public repository at https://github.com/coongroup.
About
Data analysis and GC/MS quantitation software used throughtout the Y3K project
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published