This action runs Snakemake on the repository.
Required The working directory to use. Default .test.
The Snakefile containing the workflow description. Default Snakefile.
Additional arguments to pass to Snakemake.
Preliminary commands to run before the workflow execution.
uses: snakemake/snakemake-github-action@v1.4.0
with:
directory: '.test'
snakefile: 'workflow/Snakefile'
args: '--use-conda'
stagein: '' # additional preliminary commands to run (can be multiline)