common-workflow-lab · ZimmerA · Dec 23, 2021 · Dec 9, 2021 · Dec 13, 2021 · Dec 13, 2021
diff --git a/.github/workflows/workflow.yml b/.github/workflows/workflow.yml
@@ -0,0 +1,32 @@
+name: Continuous integration tests
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+concurrency:
+  group: build-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+env:
+  NODE_VERSION: 17.x
+
+jobs:
+
+  CI:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: actions/setup-node@v1
+        with:
+           node-version: ${{ env.NODE_VERSION }}
+      - run: node --version
+      - run: npm install
+      - run: npm test
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v2.1.0
+        with:
+          fail_ci_if_error: true
+          flags: unittests
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,106 @@
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+lerna-debug.log*
+
+# Diagnostic reports (https://nodejs.org/api/report.html)
+report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
+
+# Runtime data
+pids
+*.pid
+*.seed
+*.pid.lock
+
+# Directory for instrumented libs generated by jscoverage/JSCover
+lib-cov
+
+# Coverage directory used by tools like istanbul
+coverage
+*.lcov
+
+# nyc test coverage
+.nyc_output
+
+# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
+.grunt
+
+# Bower dependency directory (https://bower.io/)
+bower_components
+
+# node-waf configuration
+.lock-wscript
+
+# Compiled binary addons (https://nodejs.org/api/addons.html)
+build/Release
+
+# Dependency directories
+node_modules/
+jspm_packages/
+
+# TypeScript v1 declaration files
+typings/
+
+# TypeScript cache
+*.tsbuildinfo
+
+# Optional npm cache directory
+.npm
+
+# Optional eslint cache
+.eslintcache
+
+# Microbundle cache
+.rpt2_cache/
+.rts2_cache_cjs/
+.rts2_cache_es/
+.rts2_cache_umd/
+
+# Optional REPL history
+.node_repl_history
+
+# Output of 'npm pack'
+*.tgz
+
+# Yarn Integrity file
+.yarn-integrity
+
+# dotenv environment variables file
+.env
+.env.test
+
+# parcel-bundler cache (https://parceljs.org/)
+.cache
+
+# Next.js build output
+.next
+
+# Nuxt.js build / generate output
+.nuxt
+dist
+
+# Gatsby files
+.cache/
+# Comment in the public line in if your project uses Gatsby and *not* Next.js
+# https://nextjs.org/blog/next-9-1#public-directory-support
+# public
+
+# vuepress build output
+.vuepress/dist
+
+# Serverless directories
+.serverless/
+
+# FuseBox cache
+.fusebox/
+
+# DynamoDB Local files
+.dynamodb/
+
+# TernJS port file
+.tern-port
+
+built/
diff --git a/README.md b/README.md
@@ -0,0 +1,10 @@
+# cwl-ts-auto
+This project contains TypeScript objects and utilities auto-generated by https://github.com/common-workflow-language/schema_salad for parsing documents corresponding to the https://w3id.org/cwl/cwl schema
+
+## Installation
+To install the latest version of cwl-ts-auto execute:
+
+`npm install cwl-ts-auto`
+
+## Limitations
+cwl-ts-auto only supports the CWL v1.2 syntax. Other documents have to be upgraded using the [cwl-upgrader](https://pypi.org/project/cwl-upgrader/)
diff --git a/package.json b/package.json
@@ -0,0 +1,48 @@
+{
+  "name": "cwl-ts-auto",
+  "version": "0.1.0",
+  "description": "This project contains TypeScript objects and utilities auto-generated by https://github.com/common-workflow-language/schema_salad for parsing documents corresponding to the https://w3id.org/cwl/cwl# schema.",
+  "author": "Adrian Zimmer",
+  "homepage" : "https://www.commonwl.org/",
+  "license": "Apache License, Version 2.0",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/common-workflow-lab/cwl-ts-auto"
+  },
+  "bugs": {
+    "url": "https://github.com/common-workflow-lab/cwl-ts-auto/issues"
+  },
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "scripts": {
+    "build": "rm -rf ./dist && tsc",
+    "test": "nyc --reporter=lcov mocha --require ts-node/register src/test/**/*.ts"
+  },
+  "devDependencies": {
+    "@types/chai": "^4.2.22",
+    "@types/chai-as-promised": "^7.1.4",
+    "@types/js-yaml": "^4.0.4",
+    "@types/mocha": "^9.0.0",
+    "@types/node": "^16.11.6",
+    "@types/node-fetch": "^2.5.12",
+    "@types/sinon": "^10.0.6",
+    "@types/uuid": "^8.3.3",
+    "chai": "^4.3.4",
+    "chai-as-promised": "^7.1.1",
+    "mocha": "^9.1.3",
+    "nyc": "^15.1.0",
+    "sinon": "^12.0.1",
+    "ts-node": "^10.4.0",
+    "typescript": "^4.4.4",
+    "codecov.io": "^0.1.6"
+  },
+  "dependencies": {
+    "js-yaml": "^4.1.0",
+    "node-fetch": "^2.6.6",
+    "uri-js": "^4.4.1",
+    "uuid": "^8.3.2"
+  },
+  "files": [
+    "/dist"
+  ]
+}
diff --git a/src/Any.ts b/src/Any.ts
@@ -0,0 +1,4 @@
+
+export enum Any {
+  ANY='Any',
+}
diff --git a/src/ArraySchema.ts b/src/ArraySchema.ts
@@ -0,0 +1,142 @@
+
+import {
+  Dictionary,
+  expandUrl,
+  loadField,
+  LoaderInstances,
+  LoadingOptions,
+  Saveable,
+  ValidationException,
+  prefixUrl,
+  save,
+  saveRelativeUri
+} from './util/Internal'
+import { v4 as uuidv4 } from 'uuid'
+import * as Internal from './util/Internal'
+
+
+/**
+ * Auto-generated class implementation for https://w3id.org/cwl/salad#ArraySchema
+ */
+export class ArraySchema extends Saveable implements Internal.ArraySchemaProperties {
+  extensionFields?: Internal.Dictionary<any>
+
+  /**
+   * Defines the type of the array elements.
+   */
+  items: Internal.PrimitiveType | Internal.RecordSchema | Internal.EnumSchema | Internal.ArraySchema | string | Array<Internal.PrimitiveType | Internal.RecordSchema | Internal.EnumSchema | Internal.ArraySchema | string>
+
+  /**
+   * Must be `array`
+   */
+  type: Internal.enum_d062602be0b4b8fd33e69e29a841317b6ab665bc
+
+
+  constructor ({loadingOptions, extensionFields, items, type} : {loadingOptions?: LoadingOptions} & Internal.ArraySchemaProperties) {
+    super(loadingOptions)
+    this.extensionFields = extensionFields ?? {}
+    this.items = items
+    this.type = type
+  }
+
+  /**
+   * Used to construct instances of {@link ArraySchema }.
+   *
+   * @param __doc                           Document fragment to load this record object from.
+   * @param baseuri                         Base URI to generate child document IDs against.
+   * @param loadingOptions                  Context for loading URIs and populating objects.
+   * @param docRoot                         ID at this position in the document (if available)
+   * @returns                               An instance of {@link ArraySchema }
+   * @throws {@link ValidationException}    If the document fragment is not a
+   *                                        {@link Dictionary} or validation of fields fails.
+   */
+  static override async fromDoc (__doc: any, baseuri: string, loadingOptions: LoadingOptions,
+    docRoot?: string): Promise<Saveable> {
+    const _doc = Object.assign({}, __doc)
+    const __errors: ValidationException[] = []
+
+    let items
+    try {
+      items = await loadField(_doc.items, LoaderInstances.typedslunionOfPrimitiveTypeLoaderOrRecordSchemaLoaderOrEnumSchemaLoaderOrArraySchemaLoaderOrstrtypeOrarrayOfunionOfPrimitiveTypeLoaderOrRecordSchemaLoaderOrEnumSchemaLoaderOrArraySchemaLoaderOrstrtype2,
+        baseuri, loadingOptions)
+    } catch (e) {
+      if (e instanceof ValidationException) {
+        __errors.push(
+          new ValidationException('the `items` field is not valid because: ', [e])
+        )
+      } else {
+        throw e
+      }
+    }
+
+    let type
+    try {
+      type = await loadField(_doc.type, LoaderInstances.typedslenum_d062602be0b4b8fd33e69e29a841317b6ab665bcLoader2,
+        baseuri, loadingOptions)
+    } catch (e) {
+      if (e instanceof ValidationException) {
+        __errors.push(
+          new ValidationException('the `type` field is not valid because: ', [e])
+        )
+      } else {
+        throw e
+      }
+    }
+
+    const extensionFields: Dictionary<any> = {}
+    for (const [key, value] of Object.entries(_doc)) {
+      if (!ArraySchema.attr.has(key)) {
+        if ((key as string).includes(':')) {
+          const ex = expandUrl(key, '', loadingOptions, false, false)
+          extensionFields[ex] = value
+        } else {
+          __errors.push(
+            new ValidationException(`invalid field ${key as string}, \
+            expected one of: \`items\`,\`type\``)
+          )
+          break
+        }
+      }
+    }
+
+    if (__errors.length > 0) {
+      throw new ValidationException("Trying 'ArraySchema'", __errors)
+    }
+
+    const schema = new ArraySchema({
+      extensionFields: extensionFields,
+      loadingOptions: loadingOptions,
+      items: items,
+      type: type
+    })
+    return schema
+  }
+
+  save (top: boolean = false, baseUrl: string = '', relativeUris: boolean = true)
+  : Dictionary<any> {
+    const r: Dictionary<any> = {}
+    for (const ef in this.extensionFields) {
+      r[prefixUrl(ef, this.loadingOptions.vocab)] = this.extensionFields.ef
+    }
+
+    if (this.items != null) {
+      r.items = save(this.items, false, baseUrl, relativeUris)
+    }
+
+    if (this.type != null) {
+      r.type = save(this.type, false, baseUrl, relativeUris)
+    }
+
+    if (top) {
+      if (this.loadingOptions.namespaces != null) {
+        r.$namespaces = this.loadingOptions.namespaces
+      }
+      if (this.loadingOptions.schemas != null) {
+        r.$schemas = this.loadingOptions.schemas
+      }
+    }
+    return r
+  }
+
+  static attr: Set<string> = new Set(['items','type'])
+}
diff --git a/src/ArraySchemaProperties.ts b/src/ArraySchemaProperties.ts
@@ -0,0 +1,21 @@
+
+import * as Internal from './util/Internal'
+
+
+/**
+ * Auto-generated interface for https://w3id.org/cwl/salad#ArraySchema
+ */
+export interface ArraySchemaProperties  {
+
+  extensionFields?: Internal.Dictionary<any>
+
+  /**
+   * Defines the type of the array elements.
+   */
+  items: Internal.PrimitiveType | Internal.RecordSchema | Internal.EnumSchema | Internal.ArraySchema | string | Array<Internal.PrimitiveType | Internal.RecordSchema | Internal.EnumSchema | Internal.ArraySchema | string>
+
+  /**
+   * Must be `array`
+   */
+  type: Internal.enum_d062602be0b4b8fd33e69e29a841317b6ab665bc
+}
diff --git a/src/CWLType.ts b/src/CWLType.ts
@@ -0,0 +1,5 @@
+
+export enum CWLType {
+  FILE='File',
+  DIRECTORY='Directory',
+}