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  • nf-core-scflow Public

    Complete analysis workflow for single-cell/nuclei RNA-sequencing data.

    Nextflow 7 15 MIT License Updated Nov 19, 2024

  • combiz Public

    Updated Jul 22, 2024

  • scFlow Public

    Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

    rna-seq r single-cell
    R 56 13 Other Updated Feb 21, 2024

  • scFlowData Public

    Supplementary data files for scFlow

    1 Updated Mar 24, 2023

  • dagster Public

    Forked from dagster-io/dagster

    An orchestration platform for the development, production, and observation of data assets.

    Python Apache License 2.0 Updated Nov 11, 2022

  • scFlow-Workshop Public

    Materials for the scFlow Workshop

    HTML 1 1 Updated Aug 5, 2022

  • scflowpy Public

    Python helper package for scFlow

    Python 1 2 Other Updated May 22, 2022

  • hierarchicell Public

    Forked from kdzimm/hierarchicell

    An R package for simulating cell-type specific and hierarchical single-cell expression data

    R Updated Jan 7, 2022

  • deeplearning-biology Public

    Forked from hussius/deeplearning-biology

    A list of deep learning implementations in biology

    Updated Nov 5, 2021

  • scFlow_Supplementary Public

    Supplemental Data for the scFlow Manuscript

    R 2 1 GNU General Public License v3.0 Updated Aug 15, 2021

  • scFlowExamples Public

    Forked from neurogenomics/scFlowExamples
    R Updated Jun 24, 2021

  • test-datasets Public

    Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    MIT License Updated May 16, 2021

  • configs Public

    Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    Nextflow MIT License Updated Dec 18, 2020

  • ckaidocker Public

    Docker Configuration for AI in Python

    python docker dockerfile
    Updated Jul 12, 2020

  • hello Public

    Forked from nextflow-io/hello

    Classic hello world script in Nextflow language

    Nextflow GNU General Public License v3.0 Updated May 13, 2020

  • yamlpack Public

    En-masse installation of R-packages

    R 20 Other Updated Apr 25, 2020

  • rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

    Nextflow MIT License Updated Mar 11, 2020

  • ML-React-App-Template Public

    Forked from kb22/ML-React-App-Template

    This is a template for creating a Machine Learning application with its front-end developed using React which interacts with a Flask service as the back-end and makes predictions.

    JavaScript MIT License Updated Mar 6, 2020

  • RANN.L1 Public

    Forked from jefferislab/RANN

    R package providing fast nearest neighbour search (wraps ANN library)

    C++ Updated Feb 20, 2020

  • shRNA-GUI Public

    A simple PyQT5 GUI tool for design of oligonucleotides for cloning into a vector for shRNA mediated gene knockdown

    Python GNU General Public License v3.0 Updated Feb 6, 2019

  • Lending_Club Public

    Predicting creditworthiness of loan applicants using logistic regression models (with R)

    R MIT License Updated Jan 20, 2019

  • d3-ass1-plot Public

    Custom D3.JS plot of epigenetic data at the ASS1 gene promoter

    HTML Updated Jan 20, 2019

  • ckrdocker Public

    Docker Configuration for Data Science / Bioinformatics in R

    R MIT License Updated Sep 21, 2018
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