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figeno Public
Forked from CompEpigen/figenoTool for making genomics figures
Python GNU General Public License v3.0 UpdatedApr 5, 2024 -
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stLearn Public
Forked from BiomedicalMachineLearning/stLearnA novel machine learning pipeline to analyse spatial transcriptomics data
Python Other UpdatedDec 28, 2023 -
dictys Public
Forked from pinellolab/dictysContext specific and dynamic gene regulatory network reconstruction and analysis
Python GNU Affero General Public License v3.0 UpdatedDec 12, 2023 -
BioRookie_Article Public
Synchronize the bioinformatics knowledge-sharing content in the WeChat public account to GitHub to facilitate everyone's systematic learning
UpdatedOct 16, 2023 -
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annotated_deep_learning_paper_implementations Public
Forked from labmlai/annotated_deep_learning_paper_implementations🧑🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cycleg…
Jupyter Notebook MIT License UpdatedJul 10, 2023 -
Palantir Public
Forked from dpeerlab/PalantirSingle cell trajectory detection
Jupyter Notebook GNU General Public License v2.0 UpdatedJul 3, 2023 -
scDisInFact Public
Forked from ZhangLabGT/scDisInFactJupyter Notebook GNU General Public License v3.0 UpdatedJun 17, 2023 -
scBasset Public
Forked from calico/scBassetSequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
Jupyter Notebook Apache License 2.0 UpdatedJun 13, 2023 -
IndepthPathway Public
Forked from wangxlab/IndepthPathwayR GNU General Public License v3.0 UpdatedJun 7, 2023 -
COSG Public
Forked from genecell/COSGAccurate and fast cell marker gene identification with COSG
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 29, 2023 -
NeuronChat Public
Forked from Wei-BioMath/NeuronChatR GNU General Public License v3.0 UpdatedMay 16, 2023 -
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scDrug Public
Forked from ailabstw/scDrugscDrug: From scRNA-seq to Drug Repositioning
Python UpdatedMay 8, 2023 -
SCP Public
Forked from zhanghao-njmu/SCPSCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
R GNU General Public License v3.0 UpdatedApr 27, 2023 -
bioinformatics_tool_recommendation Public
Forked from ryangreenj/bioinformatics_tool_recommendationPython MIT License UpdatedApr 25, 2023 -
TwoSampleMR Public
Forked from MRCIEU/TwoSampleMRR package for performing 2-sample MR using MR-Base database
R Other UpdatedApr 17, 2023 -
SpaceMarkers Public
Forked from DeshpandeLab/SpaceMarkersAn R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
R MIT License UpdatedApr 12, 2023 -
Auto-GPT Public
Forked from Significant-Gravitas/AutoGPTAn experimental open-source attempt to make GPT-4 fully autonomous.
Python MIT License UpdatedApr 5, 2023 -
cellDancer Public
Forked from GuangyuWangLab2021/cellDancerJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedApr 3, 2023 -
networkGWAS Public
Forked from BorgwardtLab/networkGWASMethod for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype of interest.
Python Other UpdatedApr 1, 2023 -
chatgpt_academic Public
Forked from binary-husky/gpt_academic科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能
Python GNU General Public License v3.0 UpdatedMar 28, 2023 -
professional-programming Public
Forked from charlax/professional-programmingA collection of learning resources for curious software engineers
Python MIT License UpdatedMar 26, 2023 -
scg_lib_structs Public
Forked from Teichlab/scg_lib_structsCollections of library structure and sequence of popular single cell genomic methods
HTML UpdatedMar 23, 2023 -
seqspec Public
Forked from pachterlab/seqspecmachine-readable file format for genomic library sequence and structure
Python MIT License UpdatedMar 22, 2023 -
5loclung Public
Forked from elo073/5loclungCustom codes accompanying single cell spatial transcriptomic study on the healthy human lung
Jupyter Notebook UpdatedMar 21, 2023 -
phenonaut Public
Forked from CarragherLab/phenonautA tool for exploration of multiomic phenotypic space
Python Apache License 2.0 UpdatedMar 20, 2023
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