Stars
Set of scripts for generating bash files for use with slurm
The MLST pipeline developed by the PathOGiST research group
An automated pipeline for sequence analysis and mutation annotation.
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
Tools (written in C using htslib) for manipulating next-generation sequencing data
Python Data Science Handbook: full text in Jupyter Notebooks
Simulate genealogical trees and genomic sequence data using population genetic models
An r package for generating beautiful and customizable heatmaps
mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
Scripts to download genomes from the NCBI FTP servers
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
a toolkit for working with Oxford nanopore data
Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.