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slurm_scripts Public
Forked from ccdmb/slurm_scriptsSLURM script collection
Shell UpdatedApr 11, 2025 -
GenoClustR Public
An R package for finding genomic clusters of co-regulated genes
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rocker_extended Public
Utilities and extended definition files for Rstudio rocker containers.
Shell GNU General Public License v3.0 UpdatedApr 3, 2025 -
windowstackr Public
An HTML widget to have a desktop window-like interface in R-shiny apps.
R Apache License 2.0 UpdatedFeb 7, 2025 -
pante Public
A pipeline for predicting and masking transposable elements in multiple genomes.
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INFEST Public
Forked from A02l01/INFESTPython script to compute kinematics of lesion development
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jbrowse2-nocompile-plugins Public
Some helper functions for customising JBrowse2 servers
JavaScript Apache License 2.0 UpdatedOct 4, 2023 -
Repository containing code used to analyse Sclerotinia transcriptomics data
HTML The Unlicense UpdatedSep 25, 2023 -
how_are_we_stranded_here Public archive
Forked from signalbash/how_are_we_stranded_hereCheck strandedness of RNA-Seq fastq files
Python MIT License UpdatedApr 26, 2023 -
selectml Public
A package for performing and optimising genomic selection using machine learning
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prj Public
A simple, opiniated, data analysis backup and change logging utility.
Shell Apache License 2.0 UpdatedNov 8, 2022 -
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gffpal Public
A flexible library for working with GFF data.
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deepredeff-py Public
A python port of the deepredeff R-package
Python MIT License UpdatedAug 23, 2022 -
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bash_utils Public archive
Functions to make bash go nice
Shell Apache License 2.0 UpdatedAug 13, 2022 -
gperceiver Public
Perceiver neural network building blocks
Python Apache License 2.0 UpdatedJun 8, 2022 -
EffectorP-3.0 Public
Forked from JanaSperschneider/EffectorP-3.0Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
Python Other UpdatedNov 16, 2021 -
panann Public
Pipelines for gene annotation of pangenomes.
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riprap Public
Tools for detecting and quantifying RIP-like signatures in genomes.
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EffectorP-2.0 Public
Forked from JanaSperschneider/EffectorP-2.0Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
Python Other UpdatedMay 26, 2020 -
EffectorP-1.0 Public
Forked from JanaSperschneider/EffectorP-1.0EffectorP: predicting fungal effector proteins from secretomes using machine learning
Python Other UpdatedMay 26, 2020 -
ApoplastP Public
Forked from JanaSperschneider/ApoplastPPrediction of effectors and plant proteins in the plant apoplast using machine learning
Python Other UpdatedMay 26, 2020 -
ffdb Public
Script for manipulating ffindex databases
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deepsig Public
Forked from BolognaBiocomp/deepsigDeepSig - Predictor of signal peptides in proteins based on deep learning
Roff GNU General Public License v3.0 UpdatedMay 18, 2020 -
LOCALIZER Public
Forked from JanaSperschneider/LOCALIZERLOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell
Python Other UpdatedMay 17, 2020 -
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