8000 Integrate LogIt into package · Issue #88 · datasnakes/OrthoEvolution · GitHub
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Integrate LogIt into package #88

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grabear opened this issue Oct 3, 2017 · 12 comments
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Integrate LogIt into package #88

grabear opened this issue Oct 3, 2017 · 12 comments
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@grabear @sdhutchins
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Priority: High 🔥🔥🔥 Type: Enhancement ❤️
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Stable release v0.1

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@grabear
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grabear commented Oct 3, 2017 •
edited by sdhutchins
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  • Use LogIt as a general logging tool.
    • Use in each module and make a master log.
    • Give each module a specific color.
@grabear grabear added this to the Official project release milestone Oct 3, 2017
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grabear commented Oct 3, 2017

Will address some aspects of #83

This was referenced Oct 3, 2017
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@sdhutchins
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I like the idea of slackify in the pipeline/datamanagement realm.

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grabear commented Oct 3, 2017 •
edited by sdhutchins
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LogIt integration:

  • Cookies
    • cookie_jar.py
  • Manager
    • management.py
    • data_management.py
  • Orthologs
    • msa.py
    • blastn_comparative_genetics.py
    • comparative_genetics_files.py
    • comparative_genetics_objects.py
    • genbank.py
  • Pipeline
  • Tools
    • ftp
    • sge

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Probably needs to be added to the FTP module.

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@grabear status here?

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do we want to integrate that automatically or just with the pipeline? @grabear

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grabear commented Jan 22, 2018 •
edited by sdhutchins
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  • Add a critical level. Change the error level color to dark red, and the critical level color to bright red as it is here.

Addressed in commit 6ef6498

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@grabear There's no color for it for some odd reason. Might go to logzero and see if they'll add one. I also think they have an issue related to this.

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@grabear Check this issue metachris/logzero#12

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@grabear adding critical level color now.

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image

Thoughts?

@datasnakes datasnakes deleted a comment from grabear Mar 25, 2018
@sdhutchins sdhutchins changed the title Integrate LogIt and Slackify into package. Integrate LogIt into package Mar 25, 2018
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sdhutchins commented Sep 1, 2018 •
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For some reason I can't find the code that did this. hmm

Found it.

@grabear grabear closed this as completed May 20, 2019
@grabear grabear mentioned this issue May 20, 2019
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Priority: High 🔥🔥🔥 Type: Enhancement ❤️
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Stable release v0.1
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