10000 david4096 (David Steinberg) / Starred · GitHub
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Python 4 1 Updated Jul 12, 2025

Excel Add-In for annotation of experimental data and computational workflows.

F# 42 8 Updated Jul 11, 2025

Bioconductor package to access the harmonized metadata through ontology

R 2 1 Updated Jun 7, 2025

implicit pangenome graph

Rust 66 6 Updated Jul 13, 2025

WFA-lib: Wavefront alignment algorithm library v2

C 188 45 Updated May 12, 2025

Clojure library and command line application for converting CSV to RDF. An implementation of the W3C CSVW specifications

HTML 29 6 Updated Jul 1, 2025

Python tools for identification and distribution of reference sequences and sequence collections

Python 8 1 Updated Jul 11, 2025

SPARQList: Repository server for working SPARQL snippets

JavaScript 13 5 Updated Mar 29, 2024

tRNA Analysis of eXpression

Python 11 6 Updated Feb 13, 2025

A tool for detecting and quantifying alternative splicing with RNA-seq

Python 3 3 Updated Dec 9, 2024

Variant Calling for the HPRC Release 2

Nextflow 12 Updated Apr 1, 2025

Convert bioinformatics file formats to Zarr

Python 36 10 Updated May 28, 2025

AI-Assisted Curation/Content ENhancement Tool for Synapse

Clojure 1 1 Updated Apr 6, 2025
Jupyter Notebook 2 Updated Nov 8, 2024

Univer is a full-stack framework for creating and editing spreadsheets, documents, and slides on both web and server.

TypeScript 9,335 826 Updated Jul 11, 2025

Data Integration Visual Exploration (DIVE)

1 Updated Oct 18, 2024

Convert vcf in parquet

Rust 27 2 Updated Jan 23, 2025

Generic SDK and CLI for GA4GH API services

Rust 14 4 Updated Feb 27, 2025

Resources for the KG course at IDS, Maastricht University

Jupyter Notebook 13 10 Updated Feb 25, 2025

Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality.

C# 11 1 Updated Jun 18, 2024

OctoTools: An agentic framework with extensible tools for complex reasoning

Python 1,224 161 Updated Jul 3, 2025

Quantum circuit optimization with deep learning

Jupyter Notebook 22 10 Updated May 25, 2020

Ontology lifecycle management

Jinja 261 56 Updated Jul 7, 2025

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

Rust 186 12 Updated Mar 10, 2025

Accelerated genomics workflows in NextFlow

Roff 36 9 Updated Sep 11, 2024

InterPlanetary Linked Data

Nunjucks 1,308 171 Updated Jul 1, 2025

A curated list of ontologies for Digital Humanities

106 13 Updated Feb 19, 2025

High-reproducibility CWL runner powered by Guix

Scheme 13 1 Updated Jun 29, 2025

Microbiome analysis

R 52 32 Updated Jul 13, 2025

MPI4All: Universal Binding Generation for MPI Parallel Programming

Python 7 Updated Mar 14, 2025
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