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UC Santa Cruz Genomics Institute
- https://orcid.org/0000-0001-6683-2270
- in/david4096
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Excel Add-In for annotation of experimental data and computational workflows.
Bioconductor package to access the harmonized metadata through ontology
Clojure library and command line application for converting CSV to RDF. An implementation of the W3C CSVW specifications
Python tools for identification and distribution of reference sequences and sequence collections
SPARQList: Repository server for working SPARQL snippets
A tool for detecting and quantifying alternative splicing with RNA-seq
Variant Calling for the HPRC Release 2
nf-osi / accent
Forked from anngvu/accentAI-Assisted Curation/Content ENhancement Tool for Synapse
Univer is a full-stack framework for creating and editing spreadsheets, documents, and slides on both web and server.
Generic SDK and CLI for GA4GH API services
Resources for the KG course at IDS, Maastricht University
Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality.
OctoTools: An agentic framework with extensible tools for complex reasoning
Quantum circuit optimization with deep learning
Work with bioinformatic files using Arrow, Polars, and/or DuckDB
Accelerated genomics workflows in NextFlow
A curated list of ontologies for Digital Humanities
High-reproducibility CWL runner powered by Guix
MPI4All: Universal Binding Generation for MPI Parallel Programming