StatefulSurface - Class to handle surfaces #3938
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Test | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| schedule: | |
| - cron: '0 0 5 * 0' # 1 per month | |
| concurrency: | |
| group: build-${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| fetch-data: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.13'] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install DIPY and its Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install . | |
| - name: Fetch Data | |
| run: | | |
| dipy_fetch all | |
| - name: Cache Data | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.dipy | |
| key: dipy-${{ hashFiles('**/dipy/data/*') }} | |
| stable: | |
| needs: fetch-data | |
| uses: ./.github/workflows/test_template.yml | |
| with: | |
| runs-on: '["ubuntu-latest", "macos-latest", "windows-latest", "macos-14"]' | |
| python-version: '["3.10", "3.11", "3.12", "3.13"]' | |
| optional-deps-pip: | |
| needs: fetch-data | |
| uses: ./.github/workflows/test_template.yml | |
| with: | |
| runs-on: '["ubuntu-latest", "macos-latest", "windows-latest"]' | |
| depends: cython!=0.29.29 numpy==1.24.2 matplotlib h5py==3.11.0 nibabel cvxpy<=1.4.4 tqdm | |
| extra-depends: scikit_learn pandas statsmodels tables scipy==1.10.1 numexpr | |
| optional-deps-conda: | |
| needs: fetch-data | |
| uses: ./.github/workflows/test_template.yml | |
| with: | |
| runs-on: '["macos-latest", "windows-latest"]' | |
| install-type: '["conda"]' | |
| depends: cython!=0.29.29 numpy==1.25.0 matplotlib h5py==3.11.0 nibabel cvxpy<=1.4.4 tqdm | |
| extra-depends: scikit-learn pandas statsmodels pytables scipy==1.10.1 | |
| parallel: | |
| needs: fetch-data | |
| uses: ./.github/workflows/test_template.yml | |
| with: | |
| runs-on: '["ubuntu-latest", "macos-latest", "windows-latest"]' | |
| extra-depends: dask joblib ray==2.9.3 protobuf<4.0.0 # More info here https://github.com/ray-project/ray/pull/25211 | |
| minimal-py310: | |
| needs: fetch-data | |
| uses: ./.github/workflows/test_template.yml | |
| with: | |
| runs-on: '["ubuntu-latest", ]' | |
| python-version: '["3.10", ]' | |
| depends: cython==0.29.25 numpy==1.22.4 scipy==1.8.1 nibabel==3.0.0 h5py==3.6.0 tqdm | |
| minimal-py311: | |
| needs: fetch-data | |
| uses: ./.github/workflows/test_template.yml | |
| with: | |
| runs-on: '["ubuntu-latest", ]' | |
| python-version: '["3.11", ]' | |
| depends: cython==0.29.32 numpy==1.23.5 scipy==1.9.3 nibabel==3.0.0 h5py==3.8.0 tqdm | |
| coverage: | |
| needs: fetch-data | |
| uses: ./.github/workflows/test_template.yml | |
| with: | |
| runs-on: '["ubuntu-latest", ]' | |
| coverage: true | |
| enable-viz-tests: true | |
| extra-depends: scikit-learn scipy statsmodels pandas tables fury tensorflow torch | |
| secrets: | |
| codecov-token: ${{ secrets.CODECOV_TOKEN }} | |
| pre-py313: | |
| needs: fetch-data | |
| uses: ./.github/workflows/test_template.yml | |
| with: | |
| runs-on: '["ubuntu-latest", ]' | |
| python-version: '["3.13",]' | |
| use-pre: true | |
| extra-depends: scikit_learn scipy statsmodels pandas tables |